ViewGene
Locus Name:
GeneID:
Location:

GeneID:2548
TrivialName: PA14_12870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12870
PAO1 Ortholog Locus:PA3942
Sequence Length:870
Protein Length:289
Start: 1104835
Stop: 1105704
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07329.1|AE004812_4 (AE004812) acyl-CoA thioesterase II [Pseudomonas aeruginosa PAO1]
Identities = 289/289 (100%), Positives = 289/289 (100%)
Sequence:
ATGACCCAGATACTGGACAACCTGGTGGCTTTGCTGAGCCTGGAACCCATCGAGGAGAACCTGTTCCGGGGC
ATGAGCCAGGATCTCGGCTTCCGCCAGCTCTATGGCGGCCAGGTCCTGGGCCAGGCACTGTCGGCGGCCAGC
CAGACGGTGGAGGACGATCGCCACGTACACTCCATGCACGGCTACTTCCTGCGTCCCGGTGACGCCAGCATG
CCGGTGGTCTACCAGGTGGACCGGGTGCGCGACGGCGGCAGCTTCAGCACCCGCCGGGTCACCGCGATCCAG
AAAGGCCAGCCGATCTTCACCCTGAGCAGCTCCTTCCAGTACGACGAGGAAGGTTTCCACCACCAGATCGAG
ATGCCCGAGGTGGTCGGCCCGGATAACTTGCCTTCGGAGCTGGAGCTGACCCGCCAGCGCGCCGAGCGGATT
CCCGAGCGCATCCGCGACAAGCTGCTGTATCCGAAGCCCATCGAGATTCGTCCGGTCACCCAGCACGACCCC
TACGACCCGCAGCCCGACGAACCGGTGAAGTACCTCTGGTTCCGCGCCGACGGCAAGCTGCCGGACGTCCCG
GCGCTGCACAAGTACCTGCTGGCCTACGCCTCGGATTTCGGTTTCCTTACCACCTCGATGCAGCCCCATGCC
GTTTCGGTGTGGCAGAAGACCATGCAGGTCGCCAGCCTCGACCACGCCCTGTGGTTCCACCGCGACCTGCGC
GCGGACGAGTGGCTGCTCTACGCCATCGACAGCCCCTGGGCCGGCAACGCACGCGGTTTCGTGCGCGGCAGC
ATCTTCAACCAGAGCGGCCAGCTGGTCGCCTCGTCGAGCCAGGAAGGCCTGATCCGCAAGCGTGAGGACTGG
GCGTGA
Translation:
MTQILDNLVALLSLEPIEENLFRGMSQDLGFRQLYGGQVLGQALSAASQTVEDDRHVHSMHGYFLRPGDASM
PVVYQVDRVRDGGSFSTRRVTAIQKGQPIFTLSSSFQYDEEGFHHQIEMPEVVGPDNLPSELELTRQRAERI
PERIRDKLLYPKPIEIRPVTQHDPYDPQPDEPVKYLWFRADGKLPDVPALHKYLLAYASDFGFLTTSMQPHA
VSVWQKTMQVASLDHALWFHRDLRADEWLLYAIDSPWAGNARGFVRGSIFNQSGQLVASSSQEGLIRKREDW
A*
AnnotationID:2556GeneID:2548
AnnotatorUID: urbach
Modification Date/Time: 2004-05-20 19:07:20
Gene Name:tesB
Confidence Code:2
GeneProduct:TesB, acyl-CoA thioesterase II
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1946, KOG3016, pfam02551
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAC73555.1| (AE000151) acyl-CoA thioesterase II
[Escherichia coli K12]
Length: 289  Identity: 50.17  Similarity: 69.20  Gaps: 3  	Bit Score: 804.0
70% similar to E.coli TesB gb|AAC73555.1|






 
Structural Features:
>gnl|CDD|11654 COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism] Length = 289
Score =  393 bits (1012), Expect = e-110
Identities = 152/289 (52%), Positives = 199/289 (68%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5099




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22244




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2548
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4242
                           PA3942_tr
                           translation of PA3942
                           289
                           99.99
                           99.99
                           0
                           1524.0
     

     
     
124900
                           gb|AAG07329.1|AE004812_4
                           (AE004812) acyl-CoA thioesterase II [Pseudomonas aeruginosa PAO1]
                           289
                           99.99
                           99.99
                           0
                           1524.0
     

     
     
124901
                           gb|AAN70332.1|AE016675_2
                           (AE016791) acyl-CoA thioesterase II [Pseudomonas putida KT2440]
                           289
                           78.89
                           89.96
                           0
                           1242.0
     

     
     
124902
                           gb|AAO58106.1|
                           (AE016872) acyl-CoA thioesterase II [Pseudomonas syringae pv. tomato str. DC3000]
                           289
                           77.16
                           88.58
                           0
                           1217.0
     

     
     
124906
                           gb|AAN54963.1|AE015634_7
                           (AE015634) acyl-CoA thioesterase II [Shewanella oneidensis MR-1]
                           289
                           55.36
                           72.31
                           1
                           845.0
     

     






      

          
GC ORFID: 45550How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3942Glimmer Score: 

          
Start: 3849103Stop: 3848234

          
Length: 870


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3942 translation of PA3942Homolog Bit Score 591.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5385 (ORF: BLASTX 473.0), t_PA3942 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCAGATACTGGACAACCTGGTGGCTTTGCTGAGCCTGGAACCCATCGAGGAGAACCTGTTCCGGGGC 
ATGAGCCAGGATCTCGGCTTCCGCCAGCTCTATGGCGGCCAGGTCCTGGGCCAGGCACTGTCGGCGGCCAGC 
CAGACGGTGGAGGACGATCGCCACGTACACTCCATGCACGGCTACTTCCTGCGTCCCGGTGACGCCAGCATG 
CCGGTGGTCTACCAGGTGGACCGGGTGCGCGACGGCGGCAGCTTCAGCACCCGCCGGGTCACCGCGATCCAG 
AAAGGCCAGCCGATCTTCACCCTGAGCAGCTCCTTCCAGTACGACGAGGAAGGTTTCCACCACCAGATCGAG 
ATGCCCGAGGTGGTCGGCCCGGATAACTTGCCTTCGGAGCTGGAGCTGACCCGCCAGCGCGCCGAGCGGATT 
CCCGAGCGCATCCGCGACAAGCTGCTGTATCCGAAGCCCATCGAGATTCGTCCGGTCACCCAGCACGACCCC 
TACGACCCGCAGCCCGACGAACCGGTGAAGTACCTCTGGTTCCGCGCCGACGGCAAGCTGCCGGACGTCCCG 
GCGCTGCACAAGTACCTGCTGGCCTACGCCTCGGATTTCGGTTTCCTTACCACCTCGATGCAGCCCCATGCC 
GTTTCGGTGTGGCAGAAGACCATGCAGGTCGCCAGCCTCGACCACGCCCTGTGGTTCCACCGCGACCTGCGC 
GCGGACGAGTGGCTGCTCTACGCCATCGACAGCCCCTGGGCCGGCAACGCACGCGGTTTCGTGCGCGGCAGC 
ATCTTCAACCAGAGCGGCCAGCTGGTCGCCTCGTCGAGCCAGGAAGGCCTGATCCGCAAGCGTGAGGACTGG 
GCGTGA