ViewGene
Locus Name:
GeneID:
Location:

GeneID:2547
TrivialName: PA14_13650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13650
PAO1 Ortholog Locus:PA3886
Sequence Length:900
Protein Length:299
Start: 1174062
Stop: 1173163
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07273.1|AE004805_11 (AE004805) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 293/299 (97%), Positives = 295/299 (98%)
Sequence:
ATGAGCGATGCCCCGACCTCCCCGCGCTTCAGCGCCGCCACCAGCACCCGCCTGCTCGACCATGCGCAACTG
GAGACGCTCTGCGCCGACTATGACGGCTTCCTTCTCGATCTCTGGGGCGTAGTGATGGACGGCGCCGAGGCG
TTCCCCGGCGCCCTCGCCTGGCTCGCCCGGCGGCACGCCGAAGGCCGCCCGGTCTGGTTCCTCAGCAACTCG
TCCAGCAGCGTGGTGGAAATGAGCGCCGGGCTCGAGCGCCTGGGCATCCGGCGCGACTGGTTCGCCGGCATC
ACCACGTCCGGCCAGTTGACTATCGACGCCCTGCTGCAAACCGCCGAATACCGGCGTGGCGGTATCTACCTG
GCCGGCGTCGGCCTGGCCCAGCAGAGCTGGCCGGCGGAAATCCGCGAGCGCTTCGTCGACGACATCACCCAG
GCGGCGCTGATCGTCGGCGTCGGCAGCTTTCCCCAGGAAGAACTGGAACAGCGCTTCGCGCCCCTGCGCGGC
GCCACCGACCTGCCGTTCCTCTGCGCCAACCCGGACCGCGTGGTGGTTTCCGGCGGCCGCACGGTATACGGC
GCGGGCATGCTCGCCGAGCTGTTCAGCGAGGAAGGCGGCCAGGTCAGTTGGTACGGCAAGCCCGACCCGGCG
GCCTTCCGCATCGCCCAGCGGCAACTGGAAGCGCGCGGCGCGCGGCACATCCTGTTCGTCGGCGACTCGCTG
GTGACCGACGTCCCCGGCGCCCTCGCCGCGCGCATCGATACCCTCTGGCTGGGCGCCACCGGCATCCACCGC
GAAGCCCTGGGCGCCGAGTTCAACGGGGCGCTCGACGAGGAACGGGTCAGGTCGCTGCTGCACGGCTATCCG
ATCCGACCGCACTTTGCCGCGCCAGGGCTGGTCTGA
Translation:
MSDAPTSPRFSAATSTRLLDHAQLETLCADYDGFLLDLWGVVMDGAEAFPGALAWLARRHAEGRPVWFLSNS
SSSVVEMSAGLERLGIRRDWFAGITTSGQLTIDALLQTAEYRRGGIYLAGVGLAQQSWPAEIRERFVDDITQ
AALIVGVGSFPQEELEQRFAPLRGATDLPFLCANPDRVVVSGGRTVYGAGMLAELFSEEGGQVSWYGKPDPA
AFRIAQRQLEARGARHILFVGDSLVTDVPGALAARIDTLWLGATGIHREALGAEFNGALDEERVRSLLHGYP
IRPHFAAPGLV*
AnnotationID:2555GeneID:2547
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 13:01:48
Gene Name:
Confidence Code:3
GeneProduct:putative sugar phosphatase
Cell Localization:()
Synonyms:PA3886
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0647
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0647, NagD, Predicted sugar phosphatases of the HAD superfamily 
[Carbohydrate transport and metabolism]
CD-Length = 269 residues, 100.0% aligned
Score =  190 bits (485), Expect = 3e-49
Identities = 87/279 (31%), Positives = 120/279 (43%), Gaps = 13/279 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5097




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22242




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31680




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2547_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2547
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4241
                           PA3886_tr
                           translation of PA3886
                           299
                           97.99
                           98.66
                           0
                           1523.0
     

     
     
124899
                           gb|AAG07273.1|AE004805_11
                           (AE004805) hypothetical protein PA3886 [Pseudomonas aeruginosa PAO1]
                           299
                           97.99
                           98.66
                           0
                           1523.0
     

     






      

          
GC ORFID: 45549How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3886Glimmer Score: 

          
Start: 3779876Stop: 3780775

          
Length: 900


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3886 translation of PA3886Homolog Bit Score 591.0

          
Other Homologs:  t_PA3886 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGATGCCCCGACCTCCCCGCGCTTCAGCGCCGCCACCAGCACCCGCCTGCTCGACCATGCGCAACTG 
GAGACGCTCTGCGCCGACTATGACGGCTTCCTTCTCGATCTCTGGGGCGTAGTGATGGACGGCGCCGAGGCG 
TTCCCCGGCGCCCTCGCCTGGCTCGCCCGGCGGCACGCCGAAGGCCGCCCGGTCTGGTTCCTCAGCAACTCG 
TCCAGCAGCGTGGTGGAAATGAGCGCCGGGCTCGAGCGCCTGGGCATCCGGCGCGACTGGTTCGCCGGCATC 
ACCACGTCCGGCCAGTTGACTATCGACGCCCTGCTGCAAACCGCCGAATACCGGCGTGGCGGTATCTACCTG 
GCCGGCGTCGGCCTGGCCCAGCAGAGCTGGCCGGCGGAAATCCGCGAGCGCTTCGTCGACGACATCACCCAG 
GCGGCGCTGATCGTCGGCGTCGGCAGCTTTCCCCAGGAAGAACTGGAACAGCGCTTCGCGCCCCTGCGCGGC 
GCCACCGACCTGCCGTTCCTCTGCGCCAACCCGGACCGCGTGGTGGTTTCCGGCGGCCGCACGGTATACGGC 
GCGGGCATGCTCGCCGAGCTGTTCAGCGAGGAAGGCGGCCAGGTCAGTTGGTACGGCAAGCCCGACCCGGCG 
GCCTTCCGCATCGCCCAGCGGCAACTGGAAGCGCGCGGCGCGCGGCACATCCTGTTCGTCGGCGACTCGCTG 
GTGACCGACGTCCCCGGCGCCCTCGCCGCGCGCATCGATACCCTCTGGCTGGGCGCCACCGGCATCCACCGC 
GAAGCCCTGGGCGCCGAGTTCAACGGGGCGCTCGACGAGGAACGGGTCAGGTCGCTGCTGCACGGCTATCCG 
ATCCGACCGCACTTTGCCGCGCCAGGGCTGGTCTGA