ViewGene
Locus Name:
GeneID:
Location:

GeneID:2546
TrivialName: PA14_26830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26830
PAO1 Ortholog Locus:PA2881
Sequence Length:912
Protein Length:303
Start: 2335105
Stop: 2336016
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06269.1|AE004714_6 (AE004714) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 303/303 (100%), Positives = 303/303 (100%)
Sequence:
ATGAGCCCATCTCCCGTCCGCATCCTCTTCGTCGATGACGAGGAGCGCATCCTGCGCAGCCTGGCCATGCAG
TTCCGTCGCCATTACGAGGTGCTCACCGAGAGCGACCCGCGGCGCGCCCTGGAGCGCCTGAAGACGGAACGG
ATACAGGTGCTGGTCAGCGACCAGCGCATGCCGCAGATGAGCGGCGCCGAACTGCTGGCGCAGGCTCGCGAG
CGCTATCCGGAGACCCTGCGGATTCTCCTCACCGGCTATTCCGACCTCGATGCCGCCGTCGACGCGCTCAAC
GACGGCGGCATCTTTCGCTACCTGACCAAGCCCTGGAATCCCCAGGAAATGGCCTTCACCCTGCGCCAGGCG
GCGGAGATCGCCAGCCGCCAGGGCCTGCCGGCACCGCCCGCGGCCACGCTGGCGGCGCCGCTGAGCGTGCTG
CTGCTCGACGACGACCCGGAAACCTTGGACTGCGTCGGTGCCTTCTGCCATGCCGGCGGGCATCGCCTGCTG
CGCGCGCGCAACCTGGCCGAGGCGCTGGTATGGCTGAACACCGAACCGGTGGAGGTGCTGGTCAGCGACCTG
AAGCTGGCCGGGGAGCATACCGCGCCGCTGCTGAAATCCCTGGCCCAGGCCCATCCGCGCCTGCTCAGCCTG
GTGGTTACGCCGTTCCGCGACACCCAGGCCCTGCTCGAGCTGATCAACCAGGCGCAGATATTCCGCTACCTG
CCCAAGCCGATCCGCAGGGGATTGTTCGAGAAAGGCCTGAAGGCGGCCGCCGAGCAGGCCTTGTTGTGGCGC
GGGCGAAGCCTGCCGGAGGTCGACCGGCTGGCCGAGGTGCCGCGCGACGAGCGCGAGAAGGAACGGGTCGGC
AGCCTGCTCGGCATGCTCGGCCGCCTGCGCGAGCGGCTGACGGCCTGA
Translation:
MSPSPVRILFVDDEERILRSLAMQFRRHYEVLTESDPRRALERLKTERIQVLVSDQRMPQMSGAELLAQARE
RYPETLRILLTGYSDLDAAVDALNDGGIFRYLTKPWNPQEMAFTLRQAAEIASRQGLPAPPAATLAAPLSVL
LLDDDPETLDCVGAFCHAGGHRLLRARNLAEALVWLNTEPVEVLVSDLKLAGEHTAPLLKSLAQAHPRLLSL
VVTPFRDTQALLELINQAQIFRYLPKPIRRGLFEKGLKAAAEQALLWRGRSLPEVDRLAEVPRDEREKERVG
SLLGMLGRLRERLTA*
AnnotationID:2554GeneID:2546
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 08:08:55
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA2881
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00156
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC01253.1| (AJ243734) putative hydrogenase transcriptional regulator
           [Rhodobacter sphaeroides]
          Length = 491

 Score =  114 bits (285), Expect = 7e-25
 Identities = 52/116 (44%), Positives = 77/116 (66%)








 
Structural Features:
cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score = 82.2 bits (203), Expect = 7e-17
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 2/114 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5095




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22240




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36194




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2546_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2546
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4239
                           PA2881_tr
                           translation of PA2881
                           303
                           99.99
                           99.99
                           0
                           1524.0
     

     
     
124881
                           gb|AAG06269.1|AE004714_6
                           (AE004714) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           303
                           99.99
                           99.99
                           0
                           1524.0
     

     
     
124882
                           emb|CAC01253.1|
                           (AJ243734) putative hydrogenase transcriptional regulator [Rhodobacter sphaeroides]
                           500
                           25.00
                           34.20
                           206
                           286.0
     

     
     
124883
                           emb|CAC42238.1|
                           (AJ315650) HupR protein [Rhodobacter sphaeroides]
                           500
                           25.00
                           34.20
                           206
                           286.0
     

     
     
124884
                           gb|AAF19999.2|AF214145_6
                           (AF214145) response regulator HupR [Rhodobacter sphaeroides]
                           498
                           24.29
                           34.33
                           202
                           286.0
     

     






      

          
GC ORFID: 45548How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2881Glimmer Score: 

          
Start: 2618821Stop: 2617910

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2881 translation of PA2881Homolog Bit Score 591.0

          
Other Homologs:  t_PA2881 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCCATCTCCCGTCCGCATCCTCTTCGTCGATGACGAGGAGCGCATCCTGCGCAGCCTGGCCATGCAG 
TTCCGTCGCCATTACGAGGTGCTCACCGAGAGCGACCCGCGGCGCGCCCTGGAGCGCCTGAAGACGGAACGG 
ATACAGGTGCTGGTCAGCGACCAGCGCATGCCGCAGATGAGCGGCGCCGAACTGCTGGCGCAGGCTCGCGAG 
CGCTATCCGGAGACCCTGCGGATTCTCCTCACCGGCTATTCCGACCTCGATGCCGCCGTCGACGCGCTCAAC 
GACGGCGGCATCTTTCGCTACCTGACCAAGCCCTGGAATCCCCAGGAAATGGCCTTCACCCTGCGCCAGGCG 
GCGGAGATCGCCAGCCGCCAGGGCCTGCCGGCACCGCCCGCGGCCACGCTGGCGGCGCCGCTGAGCGTGCTG 
CTGCTCGACGACGACCCGGAAACCTTGGACTGCGTCGGTGCCTTCTGCCATGCCGGCGGGCATCGCCTGCTG 
CGCGCGCGCAACCTGGCCGAGGCGCTGGTATGGCTGAACACCGAACCGGTGGAGGTGCTGGTCAGCGACCTG 
AAGCTGGCCGGGGAGCATACCGCGCCGCTGCTGAAATCCCTGGCCCAGGCCCATCCGCGCCTGCTCAGCCTG 
GTGGTTACGCCGTTCCGCGACACCCAGGCCCTGCTCGAGCTGATCAACCAGGCGCAGATATTCCGCTACCTG 
CCCAAGCCGATCCGCAGGGGATTGTTCGAGAAAGGCCTGAAGGCGGCCGCCGAGCAGGCCTTGTTGTGGCGC 
GGGCGAAGCCTGCCGGAGGTCGACCGGCTGGCCGAGGTGCCGCGCGACGAGCGCGAGAAGGAACGGGTCGGC 
AGCCTGCTCGGCATGCTCGGCCGCCTGCGCGAGCGGCTGACGGCCTGA