ViewGene
Locus Name:
GeneID:
Location:

GeneID:2545
TrivialName: PA14_28530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28530
PAO1 Ortholog Locus:PA2751
Sequence Length:900
Protein Length:299
Start: 2461094
Stop: 2460195
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06139.1|AE004703_5 (AE004703) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 299/299 (100%), Positives = 299/299 (100%)
Sequence:
ATGTTCCGTACGGCTTATCGGGAAATAGGCCTGTTCGGCCTGGTCAAGCGCACCGTGAACGAGTTCCTCGAG
GACGACATGCCGACCTACGCCTCGGCCCTCGCCTACCAGATGCTGTTCTCGCTGTTTCCGTTCCTGCTGGTG
CTGATCACCCTCGTAGGCTACCTGCACCTGCCGGAGTTCTTCGCCTGGCTGCGCGAGCAGGCGGCGTTGCTG
CTGCCGCCCGAGGCGATGGATCAGGTCAACCCGGTGATCGACCAGTTGCAGCAGCAGAAAGGCGGCCTGCTG
TCGATCGGTATCGCGGTGGCGCTGTGGACCTCCTCGGCGGGCATCCGCTCGATGATGATCGCGCTCAACGCC
GCCTACGACGTGAAGGAGAGCCGCCCGGTATGGAAGCGCTTCTCCCTGTCGATCCTCTACACCCTCGGCATC
GCCCTGTTGTTGCTGGTGGCGGCCGGCCTGATGGTCACCGGGCCGCAGGTAATCGCCTGGATCGCCGGCCTG
GTCGGTCTGGAACAGTACCTGGTGACGCTCTGGACCTGGCTGCGCTGGCCTCTTGCGGTGTTCCTGCTGATG
CTCGCGGTGGCGCTGTTCTACTACTTGGTGCCGGATGTCGAGCAGCGTTTCCGCTTCATCACTCCCGGCTCG
GTGCTCTCGGTGATCGCCTGGATCGCCGCGTCCCTCGCCTACGGCTTCTACGTGAAGAACTTCGCCAACTAC
AACGCCATGTACGGCAGCATCGGGGCGATCATCATCCTCCTGCTGTACTTCTACCTGTCGGCGGCAGTGGTG
CTGTTCGGCGCAGAACTGAACGCGGTGATCGAACACCATTCGGAAGACGGCAAGGACCCTGGCGAACGCGAA
CTTCCGGACAACGACGACCCCGAACTCAAGGCTTGA
Translation:
MFRTAYREIGLFGLVKRTVNEFLEDDMPTYASALAYQMLFSLFPFLLVLITLVGYLHLPEFFAWLREQAALL
LPPEAMDQVNPVIDQLQQQKGGLLSIGIAVALWTSSAGIRSMMIALNAAYDVKESRPVWKRFSLSILYTLGI
ALLLLVAAGLMVTGPQVIAWIAGLVGLEQYLVTLWTWLRWPLAVFLLMLAVALFYYLVPDVEQRFRFITPGS
VLSVIAWIAASLAYGFYVKNFANYNAMYGSIGAIIILLLYFYLSAAVVLFGAELNAVIEHHSEDGKDPGERE
LPDNDDPELKA*
AnnotationID:2553GeneID:2545
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 10:10:57
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA2751
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03631,COG1295
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55117.1| (AE016861) ribonuclease BN, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 323

 Score =  419 bits (1078), Expect = e-117
 Identities = 201/285 (70%), Positives = 245/285 (85%)

>gb|AAN70133.1|AE016653_4 (AE016791) ribonuclease BN, putative [Pseudomonas putida KT2440]
          Length = 318

 Score =  411 bits (1056), Expect = e-114
 Identities = 195/290 (67%), Positives = 246/290 (84%), Gaps = 1/290 (0%)








 
Structural Features:
pfam03631, Ribonuclease BN-like family.
CD-Length = 257 residues,  99.6% aligned
Score =  181 bits (461), Expect = 9e-47
Identities = 106/257 (41%), Positives = 153/257 (59%), Gaps = 3/257 (1%)

COG1295, Rbn, Predicted membrane protein
CD-Length = 303 residues,  92.7% aligned
Score =  193 bits (492), Expect = 2e-50
Identities = 107/281 (38%), Positives = 157/281 (55%), Gaps = 5/281 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5093




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22238




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36278




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2545_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2545
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4238
                           PA2751_tr
                           translation of PA2751
                           299
                           99.99
                           99.99
                           0
                           1523.0
     

     
     
124878
                           gb|AAG06139.1|AE004703_5
                           (AE004703) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           299
                           99.99
                           99.99
                           0
                           1523.0
     

     
     
124879
                           gb|AAO55117.1|
                           (AE016861) ribonuclease BN, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           323
                           63.15
                           77.39
                           24
                           1074.0
     

     
     
124880
                           gb|AAN70133.1|AE016653_4
                           (AE016791) ribonuclease BN, putative [Pseudomonas putida KT2440]
                           319
                           61.44
                           77.42
                           21
                           1051.0
     

     






      

          
GC ORFID: 45547How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2751Glimmer Score: 

          
Start: 2492832Stop: 2493731

          
Length: 900


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2751 translation of PA2751Homolog Bit Score 591.0

          
Other Homologs:  t_PA2751 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCGTACGGCTTATCGGGAAATAGGCCTGTTCGGCCTGGTCAAGCGCACCGTGAACGAGTTCCTCGAG 
GACGACATGCCGACCTACGCCTCGGCCCTCGCCTACCAGATGCTGTTCTCGCTGTTTCCGTTCCTGCTGGTG 
CTGATCACCCTCGTAGGCTACCTGCACCTGCCGGAGTTCTTCGCCTGGCTGCGCGAGCAGGCGGCGTTGCTG 
CTGCCGCCCGAGGCGATGGATCAGGTCAACCCGGTGATCGACCAGTTGCAGCAGCAGAAAGGCGGCCTGCTG 
TCGATCGGTATCGCGGTGGCGCTGTGGACCTCCTCGGCGGGCATCCGCTCGATGATGATCGCGCTCAACGCC 
GCCTACGACGTGAAGGAGAGCCGCCCGGTATGGAAGCGCTTCTCCCTGTCGATCCTCTACACCCTCGGCATC 
GCCCTGTTGTTGCTGGTGGCGGCCGGCCTGATGGTCACCGGGCCGCAGGTAATCGCCTGGATCGCCGGCCTG 
GTCGGTCTGGAACAGTACCTGGTGACGCTCTGGACCTGGCTGCGCTGGCCTCTTGCGGTGTTCCTGCTGATG 
CTCGCGGTGGCGCTGTTCTACTACTTGGTGCCGGATGTCGAGCAGCGTTTCCGCTTCATCACTCCCGGCTCG 
GTGCTCTCGGTGATCGCCTGGATCGCCGCGTCCCTCGCCTACGGCTTCTACGTGAAGAACTTCGCCAACTAC 
AACGCCATGTACGGCAGCATCGGGGCGATCATCATCCTCCTGCTGTACTTCTACCTGTCGGCGGCAGTGGTG 
CTGTTCGGCGCAGAACTGAACGCGGTGATCGAACACCATTCGGAAGACGGCAAGGACCCTGGCGAACGCGAA 
CTTCCGGACAACGACGACCCCGAACTCAAGGCTTGA