ViewGene
Locus Name:
GeneID:
Location:

GeneID:2542
TrivialName: PA14_01500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01500
PAO1 Ortholog Locus:PA0123
Sequence Length:909
Protein Length:302
Start: 141181
Stop: 140273
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03513.1|AE004450_8 (AE004450) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 302/302 (100%), Positives = 302/302 (100%)
Sequence:
ATGGATTCGCTGAAAGGCATGGCGATCTTCGCCACTGTGGTGGACAAGGGCTCGATGGCAGCCGCGGCCCAG
AGCCTGGGCATGACCCCTTCGGCAGTCAGCCAGCAGATCCGCAAGCTGGAGAGCCGCGCCCAGGTCACTTTG
CTGCATCGCACCACCCGCCGGCTGACCCTGACCGAGGCCGGCGAGGCGTTCTATCGCAGTTGCGCGCAGATG
CTGGCGATCGCCGAGGAAGCCGAGCGGCGGCTTGGCGAATGGCGCGATGCGCCGGTGGGCGAGTTGCGCCTG
GCGGCGCCGGTGGGGTTCTCCGGCACGCTGATCACCCAGGCGCTGAAACCGTTGCTGGAGAACCACCGCCAG
TTGCGCCTGCAACTGTTCTTCCAGGACGAGCGCATCGATCTGGTCGCCGAGCGCATCGACCTGGCGATCCGC
GTCGGCAATCTCGCCGACTCCAGCCTGGTGGCGCGCCACCTCGGCGACTGGAGCAGCGTGCTCTGCGCGGCG
CCGGCCTATTTGCGCCAACGGGCGCCCATCAACCGTCCGGAGCAGTTGACCGAGGTCGACTGGATTTCCCTG
AACACCTCGAACCACCTCAACCACCTGACGCTCAGCGGGCCGGGCGGGGAAGTCTGCAAACTGCGCCTGGAG
CCACGGGTGGCCGCCAACGGGATGCTCGCGGTGCGTCAGTTCACCCTCGACGGACTCGGCGTGTCCTACCAG
CCGCTGCCGGAGGTGCGCGACGCGCTGAACGACGGGCGCCTGCAACAGCTATTGCCGGAGTGGAGGATTCCC
GGGCTCGGCATCTATGCGGTGACGCCACGGCGCGAGGCCCAGCCGGCCAAGGTGAAGGTCGCCATCGAGGCG
CTGCGGCGAGCGTTCGCCACGGACGGGGATGAGCGCTGGAGCTGA
Translation:
MDSLKGMAIFATVVDKGSMAAAAQSLGMTPSAVSQQIRKLESRAQVTLLHRTTRRLTLTEAGEAFYRSCAQM
LAIAEEAERRLGEWRDAPVGELRLAAPVGFSGTLITQALKPLLENHRQLRLQLFFQDERIDLVAERIDLAIR
VGNLADSSLVARHLGDWSSVLCAAPAYLRQRAPINRPEQLTEVDWISLNTSNHLNHLTLSGPGGEVCKLRLE
PRVAANGMLAVRQFTLDGLGVSYQPLPEVRDALNDGRLQQLLPEWRIPGLGIYAVTPRREAQPAKVKVAIEA
LRRAFATDGDERWS*
AnnotationID:2550GeneID:2542
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:30
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0123
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN57488.1|AE015885_1 (AE015885) transcriptional regulator, LysR family [Shewanella
           oneidensis MR-1]
          Length = 325

 Score =  239 bits (611), Expect = 1e-62
 Identities = 135/293 (46%), Positives = 182/293 (62%), Gaps = 7/293 (2%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score =  133 bits (334), Expect = 4e-32
Identities = 89/303 (29%), Positives = 125/303 (41%), Gaps = 11/303 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues, 100.0% aligned
Score = 96.2 bits (239), Expect = 5e-21
Identities = 64/212 (30%), Positives = 87/212 (41%), Gaps = 7/212 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5087




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22232




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33500




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2542_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2542
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4235
                           PA0123_tr
                           translation of PA0123
                           302
                           99.99
                           99.99
                           0
                           1527.0
     

     
     
124837
                           gb|AAG03513.1|AE004450_8
                           (AE004450) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           302
                           99.99
                           99.99
                           0
                           1527.0
     

     
     
124838
                           gb|AAN57488.1|AE015885_1
                           (AE015885) transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
                           336
                           40.47
                           53.86
                           45
                           611.0
     

     






      

          
GC ORFID: 45544How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0123Glimmer Score: 

          
Start: 5942520Stop: 5941612

          
Length: 909


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0123 translation of PA0123Homolog Bit Score 592.0

          
Other Homologs:  t_PA0123 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATTCGCTGAAAGGCATGGCGATCTTCGCCACTGTGGTGGACAAGGGCTCGATGGCAGCCGCGGCCCAG 
AGCCTGGGCATGACCCCTTCGGCAGTCAGCCAGCAGATCCGCAAGCTGGAGAGCCGCGCCCAGGTCACTTTG 
CTGCATCGCACCACCCGCCGGCTGACCCTGACCGAGGCCGGCGAGGCGTTCTATCGCAGTTGCGCGCAGATG 
CTGGCGATCGCCGAGGAAGCCGAGCGGCGGCTTGGCGAATGGCGCGATGCGCCGGTGGGCGAGTTGCGCCTG 
GCGGCGCCGGTGGGGTTCTCCGGCACGCTGATCACCCAGGCGCTGAAACCGTTGCTGGAGAACCACCGCCAG 
TTGCGCCTGCAACTGTTCTTCCAGGACGAGCGCATCGATCTGGTCGCCGAGCGCATCGACCTGGCGATCCGC 
GTCGGCAATCTCGCCGACTCCAGCCTGGTGGCGCGCCACCTCGGCGACTGGAGCAGCGTGCTCTGCGCGGCG 
CCGGCCTATTTGCGCCAACGGGCGCCCATCAACCGTCCGGAGCAGTTGACCGAGGTCGACTGGATTTCCCTG 
AACACCTCGAACCACCTCAACCACCTGACGCTCAGCGGGCCGGGCGGGGAAGTCTGCAAACTGCGCCTGGAG 
CCACGGGTGGCCGCCAACGGGATGCTCGCGGTGCGTCAGTTCACCCTCGACGGACTCGGCGTGTCCTACCAG 
CCGCTGCCGGAGGTGCGCGACGCGCTGAACGACGGGCGCCTGCAACAGCTATTGCCGGAGTGGAGGATTCCC 
GGGCTCGGCATCTATGCGGTGACGCCACGGCGCGAGGCCCAGCCGGCCAAGGTGAAGGTCGCCATCGAGGCG 
CTGCGGCGAGCGTTCGCCACGGACGGGGATGAGCGCTGGAGCTGA