ViewGene
Locus Name:
GeneID:
Location:

GeneID:2541
TrivialName: PA14_71640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71640
PAO1 Ortholog Locus:PA5428
Sequence Length:909
Protein Length:302
Start: 6382007
Stop: 6381099
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08813.1|AE004955_7 (AE004955) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 301/302 (99%), Positives = 301/302 (99%)
Sequence:
GTGAACCTCGAACTGAAGTGGCTGGAGGATTTCATCGCCCTGGCCGGCACCCGCAGCTTTTCCCAGGCGGCG
GAGAAGCGCTTCGTCACCCAGCCGGCCTTCAGCCGGCGCATCCGCAGCCTGGAGGACGCCCTCGGCCTGACC
CTGGTGAATCGCCAGCGCACGCCGGTGGAACTGACCGAGGCCGGGCAGCTGTTCCTGGTCACCGCGCGCAGC
GTGGTCGAGCAGCTCGGCCAGGTGGTGCGCCACCTGCACCACCTGGAAGGCGGGCAGGGCGAGGTGCTGCAG
TTCGCCGCCGCCCACTCGCTGGCGCTGGGCTTCTTCCCGCAGTGGATCGCGCGGCTGCGCAACGAGGGGCTG
AACATCGCCAGCCGGCTGATCGCCACCAACGTCGGCGAGGCGGTGCATTCCCTGCGCGAGGGTAGCTGCGAC
CTGATGCTGGCGTTCTACGACCCTGACGCCGCGTTGCAGATGGACCCGGAGATCTTCCCCTCGCTGCACCTG
GGGCGCACCGAGATGCTGCCGGTCTGCGCGGTGAACGCCGAGGGCCTGCCGCTGTTCGACCTGGAGAACGGC
CAGAGCGTGCCGCTGCTCGCCTACAGCGCCAGCGCCTTCCTCGGTCGCGGGGTCAACCTGCTGCTGCGCCAG
CGCAACCTGCGCTACACCACGGTCTACGAGACGGCGATGGCCGACAGCCTGAAGAGCATGGCGCTGCAAGGC
ATGGGCGTGGCCTGGGTGCCACGGCTGAGCGTGGTCAACGAACTGGAGCGCGGCGAACTGGCGATCTGTGGC
GGGCCGCAATGGTTCGTGCCGCAGGAAATCCGCCTGTACCGCTGCGCGCTGGTGCGCAAGGCGGCGATCCGC
CTGCTCTGGCGCAAGCTGGAAGGCGGGCTGGGCAGCGTCGAGTAG
Translation:
MNLELKWLEDFIALAGTRSFSQAAEKRFVTQPAFSRRIRSLEDALGLTLVNRQRTPVELTEAGQLFLVTARS
VVEQLGQVVRHLHHLEGGQGEVLQFAAAHSLALGFFPQWIARLRNEGLNIASRLIATNVGEAVHSLREGSCD
LMLAFYDPDAALQMDPEIFPSLHLGRTEMLPVCAVNAEGLPLFDLENGQSVPLLAYSASAFLGRGVNLLLRQ
RNLRYTTVYETAMADSLKSMALQGMGVAWVPRLSVVNELERGELAICGGPQWFVPQEIRLYRCALVRKAAIR
LLWRKLEGGLGSVE*
AnnotationID:2549GeneID:2541
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 15:03:41
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA5428
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58917.1| (AE016876) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 303

 Score =  501 bits (1291), Expect = e-141
 Identities = 250/295 (84%), Positives = 269/295 (91%)

>gb|AAN70902.1|AE016734_6 (AE016794) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 305

 Score =  499 bits (1284), Expect = e-140
 Identities = 247/295 (83%), Positives = 271/295 (91%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.0% aligned
Score =  115 bits (289), Expect = 4e-27
Identities = 77/301 (25%), Positives = 130/301 (43%), Gaps = 9/301 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14619




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22230




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34646




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2541_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2541
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4234
                           PA5428_tr
                           translation of PA5428
                           302
                           99.66
                           99.66
                           0
                           1527.0
     

     
     
124834
                           gb|AAG08813.1|AE004955_7
                           (AE004955) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           302
                           99.33
                           99.66
                           0
                           1524.0
     

     
     
124835
                           gb|AAO58917.1|
                           (AE016876) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           303
                           82.17
                           88.77
                           1
                           1281.0
     

     
     
124836
                           gb|AAN70902.1|AE016734_6
                           (AE016794) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           305
                           81.31
                           89.50
                           3
                           1279.0
     

     






      

          
GC ORFID: 45543How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5428Glimmer Score: 

          
Start: 5645696Stop: 5644788

          
Length: 909


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5428 translation of PA5428Homolog Bit Score 592.0

          
Other Homologs:  t_PA5428 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACCTCGAACTGAAGTGGCTGGAGGATTTCATCGCCCTGGCCGGCACCCGCAGCTTTTCCCAGGCGGCG 
GAGAAGCGCTTCGTCACCCAGCCGGCCTTCAGCCGGCGCATCCGCAGCCTGGAGGACGCCCTCGGCCTGACC 
CTGGTGAATCGCCAGCGCACGCCGGTGGAACTGACCGAGGCCGGGCAGCTGTTCCTGGTCACCGCGCGCAGC 
GTGGTCGAGCAGCTCGGCCAGGTGGTGCGCCACCTGCACCACCTGGAAGGCGGGCAGGGCGAGGTGCTGCAG 
TTCGCCGCCGCCCACTCGCTGGCGCTGGGCTTCTTCCCGCAGTGGATCGCGCGGCTGCGCAACGAGGGGCTG 
AACATCGCCAGCCGGCTGATCGCCACCAACGTCGGCGAGGCGGTGCATTCCCTGCGCGAGGGTAGCTGCGAC 
CTGATGCTGGCGTTCTACGACCCTGACGCCGCGTTGCAGATGGACCCGGAGATCTTCCCCTCGCTGCACCTG 
GGGCGCACCGAGATGCTGCCGGTCTGCGCGGTGAACGCCGAGGGCCTGCCGCTGTTCGACCTGGAGAACGGC 
CAGAGCGTGCCGCTGCTCGCCTACAGCGCCAGCGCCTTCCTCGGTCGCGGGGTCAACCTGCTGCTGCGCCAG 
CGCAACCTGCGCTACACCACGGTCTACGAGACGGCGATGGCCGACAGCCTGAAGAGCATGGCGCTGCAAGGC 
ATGGGCGTGGCCTGGGTGCCACGGCTGAGCGTGGTCAACGAACTGGAGCGCGGCGAACTGGCGATCTGTGGC 
GGGCCGCAATGGTTCGTGCCGCAGGAAATCCGCCTGTACCGCTGCGCGCTGGTGCGCAAGGCGGCGATCCGC 
CTGCTCTGGCGCAAGCTGGAAGGCGGGCTGGGCAGCGTCGAGTAG