ViewGene

Locus Name:
GeneID:
Location:

GeneID: 254

TrivialName: PA14_71840

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_71840

PAO1 Ortholog Locus: PA5441

Sequence Length: 2202

Protein Length: 733

Start: 6400920

Stop: 6398719

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08826.1|AE004957_1 (AE004957) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 726/733 (99%), Positives = 730/733 (99%)

Sequence:

ATGCGCTCGAAGCCGCTTCTTCCCGCCCTCCTGCTGGTGGGCGCCGGTCTCTCCCCGCTGGCCCAGGCCAGC
AGCGACGACTCCTGCTATCCCGATTGGTCGCTGGTCGGCGGCGGTGTCTGCGATACCCTGCCGTTCCTCGCC
CCGGGCAACGACACCCGCGCCAACCTGCGCCTGCTGCTGGCCGACGCCGGCCACTGGCGGCTGGTGGAGGCG
CCGCCGTCGGAGGAAGAGAAGCTCGAAGGCTACGGCCTGGTACCGTTCGGCCTGTTCCGCCTGCTGCCCGGC
GACGGCAGCCAGCCGCCCGCGCCGCCGGCGGCGAGCGAGGCCGAGACACCGCCGCCTGCGCCAGCGCCCTCG
CCGCTCGCCGAACTGGCCCGGCAGATGGGCGCCGAAGCGCTACCGGAAAAGATCGCCGGCGCCGAATTCTTC
GAGGGCGAGGGCAGCCGCTGCCGCAGCAACGACCAGGACAGCGCGCTGGCGTTTCTTCGCCAGGTGCGTGAC
GCCGGGCTGGGCGAGGCGGAGACCAAGGCCCTGGCCAACAGCCGCCTGGACCTGCTCGGTGCCTGCGGCTGG
GAACAAGAGGAACTGGGCGGTGTGCTCGCGCAAGGCGTCGAGTCGGCCGCAGGCAAGGCCTTCGCCACGTAC
CTGGAGGCTGCGGCCAACTTCTACAGCGGTCGCTTCGACGAAGCCGAACAGGGCTTCAAGGCGTTGCAGGAC
GTGTCGCAGCCCTGGCTGAAGGAAACCGCCCTGTACCTGCAGGCGCGCACCCTGCTCAACGCCGCCCAGCAG
AACGCCTTCGACGACATGGGCTTCCCCGAGCTGCAGAATGTCGACAAGGCTCGCCTGGAACAGACCCGCAGC
GCCCTCGATGCCTACCTGCAGGCGTATCCGAAGGGGCTCTACGCCGCCTCTGCCAAGGGCTTGCAGCGGCGC
GTGCATTGGCTGGCCGGCGACCAGAAGCTGCTGGCCCAGGACTATGCCGCGCAATTCGCCGAAGCCGAGCAA
GGGCAGCGCAACATGGCCCTGGAAGACCTGGTCCAGGAGGTCGACAACAAGCTCCTGACCGGTATCCAGCTC
GGCGACATCCAGACCCCGCTGCTGCTGGCGGTGGCCGACCTGGTGCAGATGCGCGCCCACGATCCGTCGACC
CCGCGCAGCTTCACCTGGGAAACGCTACAGGCCCAGCAGGCCAGCTTCGCCGCGCATCCCGAACTGTTCGCC
TACCTGCAGGCGGCCTATCGCTTCTATGTCGACCAGGACCCGGCGAAGACCCTCGAAGCGCTGCCGCAAAAG
GTCGGCAGCCTCGACTACGTCGGCTTCAGCCAGCAGACCCTGCGCGGGCTGGCGCTGGAGCAGCAGAAGGAC
TGGAAAGCCGCCGAGGCGCTCTGGCTGGAACTGTTGCCGCAGGCCGCGCAGCCGTACCAGAAGGGCCAGTTG
CAGTTGGCCCTGGCGCTCAACTACGAGCGCAGCGGCCAGTTGGAAAAGGTCTTCGCCGAAGGTTCGCCGGTC
CAGGAGCCGCTGCTGCGCAGCATCCTCCTGCGCAACGTCGCCGACGCCGCGCTGTTGCGCCGCCAGGCCAAG
CAGGGCGCGACGGCGGAAGAGCGCGACAGCGCGCTGTTCACTCTCCTTTACAAGGACCTGCGCCGCAGCCGC
TTCTCCGACTTCGGCAAGGACTTCGCGCTGCTCGGCGAAACCCCCTCGCAGACCAAGCTGGGCACCAGCCTC
GGCTATGTCTACGGCGCCGGCAACAGCCTGGAGCTGTTCCGCTGGAAGGGCGACAAGGCCGAGTCCGGCTAC
GTTTGCCCGGCCATCGCCGAGTCGGCCGCGGCGCTGGCCGCTGATGACAAGGACCCGAAGGGCCTGAACTGC
CTGGGCGAATTCATCCTGCGCAACGGTCTCGACGGCATGCCGCTGGACAGCCAGCCCGAGGCCAACGAGCTG
GGCGGCACCCCGAGCGGCTTCAAGGGCGCGGTGTACTCCCGGCTGGATGGCTATCGCCTGGTCATGGACAAC
CCCAAGGCACCGCGCGAAGACAAGGCCTACGCGCTGTTCCGCGCGATCAACTGCTTCGCCCCGGCCGGCTAC
AACACCTGCGGCCAGCAGGACATCCCGCAGGCCGAGCGCAAGCAATGGTTCCGTACGCTCAAGTCGACCTAC
GCCGACAGCTCCTGGGCCAAGGAACTGAAGTACTACTGGTGA

Translation:

MRSKPLLPALLLVGAGLSPLAQASSDDSCYPDWSLVGGGVCDTLPFLAPGNDTRANLRLLLADAGHWRLVEA
PPSEEEKLEGYGLVPFGLFRLLPGDGSQPPAPPAASEAETPPPAPAPSPLAELARQMGAEALPEKIAGAEFF
EGEGSRCRSNDQDSALAFLRQVRDAGLGEAETKALANSRLDLLGACGWEQEELGGVLAQGVESAAGKAFATY
LEAAANFYSGRFDEAEQGFKALQDVSQPWLKETALYLQARTLLNAAQQNAFDDMGFPELQNVDKARLEQTRS
ALDAYLQAYPKGLYAASAKGLQRRVHWLAGDQKLLAQDYAAQFAEAEQGQRNMALEDLVQEVDNKLLTGIQL
GDIQTPLLLAVADLVQMRAHDPSTPRSFTWETLQAQQASFAAHPELFAYLQAAYRFYVDQDPAKTLEALPQK
VGSLDYVGFSQQTLRGLALEQQKDWKAAEALWLELLPQAAQPYQKGQLQLALALNYERSGQLEKVFAEGSPV
QEPLLRSILLRNVADAALLRRQAKQGATAEERDSALFTLLYKDLRRSRFSDFGKDFALLGETPSQTKLGTSL
GYVYGAGNSLELFRWKGDKAESGYVCPAIAESAAALAADDKDPKGLNCLGEFILRNGLDGMPLDSQPEANEL
GGTPSGFKGAVYSRLDGYRLVMDNPKAPREDKAYALFRAINCFAPAGYNTCGQQDIPQAERKQWFRTLKSTY
ADSSWAKELKYYW*

AnnotationID:264 GeneID:254

AnnotatorUID: diggins

Modification Date/Time: 2005-03-17 16:04:43

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA5441

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:511

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17653

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:254

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

429 PA5441_tr translation of PA5441 733 99.04 99.59 0 3754.0

23420 gb|AAG08826.1|AE004957_1 (AE004957) hypothetical protein PA5441 [Pseudomonas aeruginosa PAO1] 733 99.04 99.59 0 3754.0

GC ORFID: `43256`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5441`	Glimmer Score:
Start: `5664609`	Stop: `5662408`
Length: `2202`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5441 translation of PA5441`	Homolog Bit Score `1450.0`
Other Homologs: `t_PA5441 (ORF: GLIMMER)`
GC ORF Sequence
ATGCGCTCGAAGCCGCTTCTTCCCGCCCTCCTGCTGGTGGGCGCCGGTCTCTCCCCGCTGGCCCAGGCCAGC AGCGACGACTCCTGCTATCCCGATTGGTCGCTGGTCGGCGGCGGTGTCTGCGATACCCTGCCGTTCCTCGCC CCGGGCAACGACACCCGCGCCAACCTGCGCCTGCTGCTGGCCGACGCCGGCCACTGGCGGCTGGTGGAGGCG CCGCCGTCGGAGGAAGAGAAGCTCGAAGGCTACGGCCTGGTACCGTTCGGCCTGTTCCGCCTGCTGCCCGGC GACGGCAGCCAGCCGCCCGCGCCGCCGGCGGCGAGCGAGGCCGAGACACCGCCGCCTGCGCCAGCGCCCTCG CCGCTCGCCGAACTGGCCCGGCAGATGGGCGCCGAAGCGCTACCGGAAAAGATCGCCGGCGCCGAATTCTTC GAGGGCGAGGGCAGCCGCTGCCGCAGCAACGACCAGGACAGCGCGCTGGCGTTTCTTCGCCAGGTGCGTGAC GCCGGGCTGGGCGAGGCGGAGACCAAGGCCCTGGCCAACAGCCGCCTGGACCTGCTCGGTGCCTGCGGCTGG GAACAAGAGGAACTGGGCGGTGTGCTCGCGCAAGGCGTCGAGTCGGCCGCAGGCAAGGCCTTCGCCACGTAC CTGGAGGCTGCGGCCAACTTCTACAGCGGTCGCTTCGACGAAGCCGAACAGGGCTTCAAGGCGTTGCAGGAC GTGTCGCAGCCCTGGCTGAAGGAAACCGCCCTGTACCTGCAGGCGCGCACCCTGCTCAACGCCGCCCAGCAG AACGCCTTCGACGACATGGGCTTCCCCGAGCTGCAGAATGTCGACAAGGCTCGCCTGGAACAGACCCGCAGC GCCCTCGATGCCTACCTGCAGGCGTATCCGAAGGGGCTCTACGCCGCCTCTGCCAAGGGCTTGCAGCGGCGC GTGCATTGGCTGGCCGGCGACCAGAAGCTGCTGGCCCAGGACTATGCCGCGCAATTCGCCGAAGCCGAGCAA GGGCAGCGCAACATGGCCCTGGAAGACCTGGTCCAGGAGGTCGACAACAAGCTCCTGACCGGTATCCAGCTC GGCGACATCCAGACCCCGCTGCTGCTGGCGGTGGCCGACCTGGTGCAGATGCGCGCCCACGATCCGTCGACC CCGCGCAGCTTCACCTGGGAAACGCTACAGGCCCAGCAGGCCAGCTTCGCCGCGCATCCCGAACTGTTCGCC TACCTGCAGGCGGCCTATCGCTTCTATGTCGACCAGGACCCGGCGAAGACCCTCGAAGCGCTGCCGCAAAAG GTCGGCAGCCTCGACTACGTCGGCTTCAGCCAGCAGACCCTGCGCGGGCTGGCGCTGGAGCAGCAGAAGGAC TGGAAAGCCGCCGAGGCGCTCTGGCTGGAACTGTTGCCGCAGGCCGCGCAGCCGTACCAGAAGGGCCAGTTG CAGTTGGCCCTGGCGCTCAACTACGAGCGCAGCGGCCAGTTGGAAAAGGTCTTCGCCGAAGGTTCGCCGGTC CAGGAGCCGCTGCTGCGCAGCATCCTCCTGCGCAACGTCGCCGACGCCGCGCTGTTGCGCCGCCAGGCCAAG CAGGGCGCGACGGCGGAAGAGCGCGACAGCGCGCTGTTCACTCTCCTTTACAAGGACCTGCGCCGCAGCCGC TTCTCCGACTTCGGCAAGGACTTCGCGCTGCTCGGCGAAACCCCCTCGCAGACCAAGCTGGGCACCAGCCTC GGCTATGTCTACGGCGCCGGCAACAGCCTGGAGCTGTTCCGCTGGAAGGGCGACAAGGCCGAGTCCGGCTAC GTTTGCCCGGCCATCGCCGAGTCGGCCGCGGCGCTGGCCGCTGATGACAAGGACCCGAAGGGCCTGAACTGC CTGGGCGAATTCATCCTGCGCAACGGTCTCGACGGCATGCCGCTGGACAGCCAGCCCGAGGCCAACGAGCTG GGCGGCACCCCGAGCGGCTTCAAGGGCGCGGTGTACTCCCGGCTGGATGGCTATCGCCTGGTCATGGACAAC CCCAAGGCACCGCGCGAAGACAAGGCCTACGCGCTGTTCCGCGCGATCAACTGCTTCGCCCCGGCCGGCTAC AACACCTGCGGCCAGCAGGACATCCCGCAGGCCGAGCGCAAGCAATGGTTCCGTACGCTCAAGTCGACCTAC GCCGACAGCTCCTGGGCCAAGGAACTGAAGTACTACTGGTGA