ViewGene
Locus Name:
GeneID:
Location:

GeneID:2539
TrivialName: PA14_62270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62270
PAO1 Ortholog Locus:PA4705
Sequence Length:888
Protein Length:295
Start: 5557189
Stop: 5556302
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08091.1|AE004884_9 (AE004884) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 290/295 (98%), Positives = 291/295 (98%)
Sequence:
ATGCGCATTCGCCTGTTCGCTTTCTGTCTGCTGCTGGGCGGCTGCCAGTCCCAACTGCCGCCGCTGCCTGAT
TGGCAGAGCCCGGAAGGGCGCGACGATCCGCAGACGGGACGAATAGTCGAATTGCGCAGCGGCGTGACGCTG
AGCCCGCAGCAACTGGTCGCACGCCTGGCGGCCGCGCCGCGAGTGATCGTCGGCGAGAAGCACGACAATCCC
GATCATCATGCCGTGGAACTGTGGCTGGCGCAGGCCCTGGGCGAATACCGGGCGCAGGGCAGCCTGCTGCTG
GAAATGCTCGATCCCGGCCAGCAACCACGGGTGGATGCGGTCCGCGCACAACTCGGGACCGGCAAGCCGGTG
GCGAACCTGGAGCAGGCCCTGGACTGGCAGAAAGGTTGGGACTGGACGCAGTACGGACCCCTGGTGTCCTGG
GCGGTTGCGCAACCCGCGCCGTTGCTGGCGGCGAACCTCCAGCGGAGCGAGATCATGCGCATCTACAGGGAG
CGTCCGCCGCTTCCCGGAACGGCCTCCAGGCGTGACAGCGTGCGCCTGCCGTTGCTTGCGCAGATTCGCGAA
TCCCACTGCGGCATGCTTCCCGACGATCAATTGCCGGCGATGCTCGCCGTCCAGCAGCAACGTGACCGCCGC
ATGGCCGAGCGTTTTCGCGATGCGCCACTGCCGGCGATGCTCGTCGCCGGCAGCTTCCACGCCCGACGCGAC
CTCGGCGTACCGGTCCACCTGCGCGACCTTGGTGCGGAGAAGGGTGCGCAGGTACTGATGCTGGTCGAGGCC
GGGCAGGCGGTAACGACGCGTGAGGCCGACTACGCCTGGTACACGCCGGCACAGCCGGACAAGGACTATTGC
GCGGAGATGAAGAAGGCGCGTTGA
Translation:
MRIRLFAFCLLLGGCQSQLPPLPDWQSPEGRDDPQTGRIVELRSGVTLSPQQLVARLAAAPRVIVGEKHDNP
DHHAVELWLAQALGEYRAQGSLLLEMLDPGQQPRVDAVRAQLGTGKPVANLEQALDWQKGWDWTQYGPLVSW
AVAQPAPLLAANLQRSEIMRIYRERPPLPGTASRRDSVRLPLLAQIRESHCGMLPDDQLPAMLAVQQQRDRR
MAERFRDAPLPAMLVAGSFHARRDLGVPVHLRDLGAEKGAQVLMLVEAGQAVTTREADYAWYTPAQPDKDYC
AEMKKAR*
AnnotationID:2547GeneID:2539
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 05:05:45
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:phuW
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3016
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70259.1|AE016666_3 (AE016791) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 294

 Score =  334 bits (857), Expect = 3e-91
 Identities = 163/291 (56%), Positives = 211/291 (72%), Gaps = 8/291 (2%)








 
Structural Features:
COG3016, PhuW, Uncharacterized iron-regulated protein
CD-Length = 295 residues, 100.0% aligned
Score =  377 bits (968), Expect = 1e-105
Identities = 101/300 (33%), Positives = 137/300 (45%), Gaps = 10/300 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5081




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22226




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37626




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2539_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2539
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4232
                           PA4705_tr
                           translation of PA4705
                           295
                           98.30
                           98.64
                           0
                           1525.0
     

     
     
124828
                           gb|AAG08091.1|AE004884_9
                           (AE004884) hypothetical protein PA4705 [Pseudomonas aeruginosa PAO1]
                           295
                           98.30
                           98.64
                           0
                           1525.0
     

     
     
124829
                           gb|AAC13284.1|
                           (AF055999) hypothetical protein PhuW [Pseudomonas aeruginosa]
                           295
                           97.96
                           98.30
                           0
                           1520.0
     

     
     
124830
                           gb|AAN70259.1|AE016666_3
                           (AE016791) lipoprotein, putative [Pseudomonas putida KT2440]
                           301
                           55.14
                           71.09
                           13
                           863.0
     

     
     
124831
                           emb|CAE15092.1|
                           (BX571868) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           315
                           39.68
                           57.46
                           39
                           588.0
     

     






      

          
GC ORFID: 45541How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4705Glimmer Score: 

          
Start: 4820869Stop: 4819982

          
Length: 888


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4705 translation of PA4705Homolog Bit Score 592.0

          
Other Homologs:  t_PA4705 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCATTCGCCTGTTCGCTTTCTGTCTGCTGCTGGGCGGCTGCCAGTCCCAACTGCCGCCGCTGCCTGAT 
TGGCAGAGCCCGGAAGGGCGCGACGATCCGCAGACGGGACGAATAGTCGAATTGCGCAGCGGCGTGACGCTG 
AGCCCGCAGCAACTGGTCGCACGCCTGGCGGCCGCGCCGCGAGTGATCGTCGGCGAGAAGCACGACAATCCC 
GATCATCATGCCGTGGAACTGTGGCTGGCGCAGGCCCTGGGCGAATACCGGGCGCAGGGCAGCCTGCTGCTG 
GAAATGCTCGATCCCGGCCAGCAACCACGGGTGGATGCGGTCCGCGCACAACTCGGGACCGGCAAGCCGGTG 
GCGAACCTGGAGCAGGCCCTGGACTGGCAGAAAGGTTGGGACTGGACGCAGTACGGACCCCTGGTGTCCTGG 
GCGGTTGCGCAACCCGCGCCGTTGCTGGCGGCGAACCTCCAGCGGAGCGAGATCATGCGCATCTACAGGGAG 
CGTCCGCCGCTTCCCGGAACGGCCTCCAGGCGTGACAGCGTGCGCCTGCCGTTGCTTGCGCAGATTCGCGAA 
TCCCACTGCGGCATGCTTCCCGACGATCAATTGCCGGCGATGCTCGCCGTCCAGCAGCAACGTGACCGCCGC 
ATGGCCGAGCGTTTTCGCGATGCGCCACTGCCGGCGATGCTCGTCGCCGGCAGCTTCCACGCCCGACGCGAC 
CTCGGCGTACCGGTCCACCTGCGCGACCTTGGTGCGGAGAAGGGTGCGCAGGTACTGATGCTGGTCGAGGCC 
GGGCAGGCGGTAACGACGCGTGAGGCCGACTACGCCTGGTACACGCCGGCACAGCCGGACAAGGACTATTGC 
GCGGAGATGAAGAAGGCGCGTTGA