ViewGene
Locus Name:
GeneID:
Location:

GeneID:2538
TrivialName: PA14_09610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09610
PAO1 Ortholog Locus:PA4200
Sequence Length:867
Protein Length:288
Start: 826930
Stop: 826064
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07587.1|AE004836_6 (AE004836) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 287/288 (99%), Positives = 287/288 (99%)
Sequence:
ATGCGAACCCTCACCACCCTCCTCGGCAACAGCCAGAAACTCGACGGCGGCGCCATGTTCGGCAATGCCCCG
CGCGCGCTCTGGTCACGCTGGATGCAGCCCGATGCGGAGAACCGCATCGACCTCGGCTGCCGTGCCTTGCTG
GTGCGCGACGGCGAGCGCAACGTACTGGTGGAGACCGGCATCGGCGCGTTCTTCCCGCCCGCCCTGCGCCAG
CGCTACGGCGTCCAGGAAGAGCGCCACGTACTGCTCGACAGCCTCGCCGCGGTCGGCCTGGACGACGCCGAC
ATCGACGTGGTGCTGCTCACCCACCTGCACTTCGACCACGCCGGCGGCCTGCTCGCCGCCTGGGAAGAAGGC
CAGCCGGCGCGCCTGCTGTTCCCCAACGCGCATTTCGTCAGCGGCCGCCGCCACTGGCAGCGCGCGCGCCAG
CCGCACCCGCGCGACCGCGCCTCGTTCGTGCCGGAACTGCTCGACCTGCTGCAGGCCAGCGGACGCCTGGAG
CTGCTCGACGACGGCGAGCGCTCGGCGCATCTGGGCGAGGGCTGGCGTTTCCATTTCAGCGAAGGCCATACC
CCGGGCCAGATGCTCCCGGAGATCGCCATGCCCGACGGCCCGGTGGTATTCAGCGGCGACCTGATCCCCGGC
GCACCCTGGGTACACCTGCCGCTGACCATGGGCTACGACCGCTTCCCGGAAGGCCTGATCGAGGAAAAGGAA
CGCCTGCTGGACAGCCTCATCGCCCGCAACGGCCGACTGGTCTTCACCCATGATCCGTGCGTCGCCATGGGC
CGGGTGCGACGCGACGAACAGGAGCGCTACAGCCTCTACGACACCCTCGAGCGGGTCGAGAACCTCGAGGCC
TGA
Translation:
MRTLTTLLGNSQKLDGGAMFGNAPRALWSRWMQPDAENRIDLGCRALLVRDGERNVLVETGIGAFFPPALRQ
RYGVQEERHVLLDSLAAVGLDDADIDVVLLTHLHFDHAGGLLAAWEEGQPARLLFPNAHFVSGRRHWQRARQ
PHPRDRASFVPELLDLLQASGRLELLDDGERSAHLGEGWRFHFSEGHTPGQMLPEIAMPDGPVVFSGDLIPG
APWVHLPLTMGYDRFPEGLIEEKERLLDSLIARNGRLVFTHDPCVAMGRVRRDEQERYSLYDTLERVENLEA
*
AnnotationID:2546GeneID:2538
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 17:05:34
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0491, pfam00753
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5079




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17028




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA4200_CDS.cgi


    		




 
URL:

















    ReferenceID:22224




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2538
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4231
                           PA4200_tr
                           translation of PA4200
                           288
                           99.65
                           99.65
                           0
                           1526.0
     

     
     
124827
                           gb|AAG07587.1|AE004836_6
                           (AE004836) hypothetical protein PA4200 [Pseudomonas aeruginosa PAO1]
                           288
                           99.65
                           99.65
                           0
                           1526.0
     

     






      

          
GC ORFID: 45540How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4200Glimmer Score: 

          
Start: 4127007Stop: 4127873

          
Length: 867


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4200 translation of PA4200Homolog Bit Score 592.0

          
Other Homologs:  t_PA4200 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGAACCCTCACCACCCTCCTCGGCAACAGCCAGAAACTCGACGGCGGCGCCATGTTCGGCAATGCCCCG 
CGCGCGCTCTGGTCACGCTGGATGCAGCCCGATGCGGAGAACCGCATCGACCTCGGCTGCCGTGCCTTGCTG 
GTGCGCGACGGCGAGCGCAACGTACTGGTGGAGACCGGCATCGGCGCGTTCTTCCCGCCCGCCCTGCGCCAG 
CGCTACGGCGTCCAGGAAGAGCGCCACGTACTGCTCGACAGCCTCGCCGCGGTCGGCCTGGACGACGCCGAC 
ATCGACGTGGTGCTGCTCACCCACCTGCACTTCGACCACGCCGGCGGCCTGCTCGCCGCCTGGGAAGAAGGC 
CAGCCGGCGCGCCTGCTGTTCCCCAACGCGCATTTCGTCAGCGGCCGCCGCCACTGGCAGCGCGCGCGCCAG 
CCGCACCCGCGCGACCGCGCCTCGTTCGTGCCGGAACTGCTCGACCTGCTGCAGGCCAGCGGACGCCTGGAG 
CTGCTCGACGACGGCGAGCGCTCGGCGCATCTGGGCGAGGGCTGGCGTTTCCATTTCAGCGAAGGCCATACC 
CCGGGCCAGATGCTCCCGGAGATCGCCATGCCCGACGGCCCGGTGGTATTCAGCGGCGACCTGATCCCCGGC 
GCACCCTGGGTACACCTGCCGCTGACCATGGGCTACGACCGCTTCCCGGAAGGCCTGATCGAGGAAAAGGAA 
CGCCTGCTGGACAGCCTCATCGCCCGCAACGGCCGACTGGTCTTCACCCATGATCCGTGCGTCGCCATGGGC 
CGGGTGCGACGCGACGAACAGGAGCGCTACAGCCTCTACGACACCCTCGAGCGGGTCGAGAACCTCGAGGCC 
TGA