ViewGene
Locus Name:
GeneID:
Location:

GeneID:2536
TrivialName: PA14_26910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26910
PAO1 Ortholog Locus:PA2875
Sequence Length:918
Protein Length:305
Start: 2340124
Stop: 2341041
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06263.1|AE004713_12 (AE004713) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 304/305 (99%), Positives = 305/305 (100%)
Sequence:
ATGCTGAACACCCTGGAAGCCTGCCTGAAGGCGGTCGATGAGATTCTCCTGGGCAAGGACCGCCAGGTGCGC
CTGGCCCTGGCCTGCCTGCTGGCCCGTGGGCACCTGTTGATCGAAGACCTGCCGGGGATGGGCAAGACCACC
CTCAGCCATGCCCTGGCGCGGGTGCTCGGGCTCAGTTTCCAGCGCATCCAGTTCACCTCGGACCTGCTGCCG
GGCGATATCCTCGGTACCTCGGTGTTCGACAAGGACAGCGGACAATTCGTCTTCCATCCCGGGCCGATCTTC
GCCGAGCTGGTGCTCGCCGACGAGATCAACCGCGCCACGCCGAAAAGCCAGAGCGCCTTGCTCGAGGCGATG
GAAGAAGGCCAGGTGACCATCGAGGGCGCCACCCGGCCCTTGCCGGAACCGTTCTTCGTCATCGCCACGCAG
AACCCGGCCAGCCAGGGCGGCACCTTCTCCCTGCCGGAATCGCAGCTGGATCGCTTCCTGATGCGCCTGTCG
CTGGGCTACCCCGGACGCGCGGCGGAACGTTCGCTGCTGCTCGGCGAAGCCCGGCGCGATCTGCTGCCGCGC
CTGGAGCCCTTGCTCGACCACGCGGCGCTGGCCGCTTTCCAGGCCGAAGTGCCGAAGGTCCGCGCCAGCGAT
GCGCTGGTGGACTACGTGCTGCGCCTGGTCGAAGCGACCCGCACGCAGCCGGCCTTCGCCCTCGGCCTGTCG
CCGCGCGGTAGCCTGGCGTTGCTCGCCGCGGCGCGTGCCTGGGCGCTGCTGGCGGGACGCGACTATGTGATT
CCGGAAGACGTCCAGGCGGTGTTGCCGGCGGTCGCCGGGCATCGCCTGCGCGACCAGGCGGACCCCACCGGG
CACGGTGGCGGCGCGCTGGTGCAATGGCTGCTGCGCGAAGTCCCGGCGCTCTGA
Translation:
MLNTLEACLKAVDEILLGKDRQVRLALACLLARGHLLIEDLPGMGKTTLSHALARVLGLSFQRIQFTSDLLP
GDILGTSVFDKDSGQFVFHPGPIFAELVLADEINRATPKSQSALLEAMEEGQVTIEGATRPLPEPFFVIATQ
NPASQGGTFSLPESQLDRFLMRLSLGYPGRAAERSLLLGEARRDLLPRLEPLLDHAALAAFQAEVPKVRASD
ALVDYVLRLVEATRTQPAFALGLSPRGSLALLAAARAWALLAGRDYVIPEDVQAVLPAVAGHRLRDQADPTG
HGGGALVQWLLREVPAL*
AnnotationID:2544GeneID:2536
AnnotatorUID: diggins
Modification Date/Time: 2005-06-11 08:08:42
Gene Name:
Confidence Code:3
GeneProduct:putative MoxR protein
Cell Localization:(1) Cytoplasmic
Synonyms:moxR
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0714
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55764.1| (AE016863) moxR protein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 305

 Score =  499 bits (1286), Expect = e-141
 Identities = 245/301 (81%), Positives = 278/301 (92%)

>gb|AAN55198.1|AE015658_4 (AE015658) MoxR protein [Shewanella oneidensis MR-1]
          Length = 303

 Score =  345 bits (884), Expect = 3e-94
 Identities = 176/284 (61%), Positives = 215/284 (75%), Gaps = 1/284 (0%)

>gb|AAM40308.1| (AE012197) methanol dehydrogenase regulator [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 317

 Score =  333 bits (854), Expect = 8e-91
 Identities = 173/292 (59%), Positives = 217/292 (74%), Gaps = 2/292 (0%)






 
Structural Features:
COG0714, COG0714, MoxR-like ATPases 






   
Genomic Context:






   
Comment:


















    ReferenceID:5075




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22220




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36197




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2536_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2536
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4227
                           PA2875_tr
                           translation of PA2875
                           305
                           99.67
                           99.99
                           0
                           1526.0
     

     
     
124644
                           gb|AAG06263.1|AE004713_12
                           (AE004713) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           305
                           99.67
                           99.99
                           0
                           1526.0
     

     
     
124645
                           gb|AAO55764.1|
                           (AE016863) moxR protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           305
                           80.65
                           91.47
                           0
                           1286.0
     

     
     
124646
                           emb|CAA46565.1|
                           (X65613) ORF2 [Pseudomonas aeruginosa]
                           316
                           63.92
                           65.50
                           64
                           916.0
     

     
     
124647
                           emb|CAD17260.1|
                           (AL646076) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           330
                           59.09
                           68.18
                           34
                           919.0
     

     






      

          
GC ORFID: 45538How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2875Glimmer Score: 

          
Start: 2613802Stop: 2612885

          
Length: 918


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2875 translation of PA2875Homolog Bit Score 592.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1040 (ORF: BLASTX 500.0), t_PA3070 (ORF: BLASTX 229.0), psyr_15may02_Scaffold1_revised_gene663 (ORF: BLASTX 229.0), t_PA2875 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAACACCCTGGAAGCCTGCCTGAAGGCGGTCGATGAGATTCTCCTGGGCAAGGACCGCCAGGTGCGC 
CTGGCCCTGGCCTGCCTGCTGGCCCGTGGGCACCTGTTGATCGAAGACCTGCCGGGGATGGGCAAGACCACC 
CTCAGCCATGCCCTGGCGCGGGTGCTCGGGCTCAGTTTCCAGCGCATCCAGTTCACCTCGGACCTGCTGCCG 
GGCGATATCCTCGGTACCTCGGTGTTCGACAAGGACAGCGGACAATTCGTCTTCCATCCCGGGCCGATCTTC 
GCCGAGCTGGTGCTCGCCGACGAGATCAACCGCGCCACGCCGAAAAGCCAGAGCGCCTTGCTCGAGGCGATG 
GAAGAAGGCCAGGTGACCATCGAGGGCGCCACCCGGCCCTTGCCGGAACCGTTCTTCGTCATCGCCACGCAG 
AACCCGGCCAGCCAGGGCGGCACCTTCTCCCTGCCGGAATCGCAGCTGGATCGCTTCCTGATGCGCCTGTCG 
CTGGGCTACCCCGGACGCGCGGCGGAACGTTCGCTGCTGCTCGGCGAAGCCCGGCGCGATCTGCTGCCGCGC 
CTGGAGCCCTTGCTCGACCACGCGGCGCTGGCCGCTTTCCAGGCCGAAGTGCCGAAGGTCCGCGCCAGCGAT 
GCGCTGGTGGACTACGTGCTGCGCCTGGTCGAAGCGACCCGCACGCAGCCGGCCTTCGCCCTCGGCCTGTCG 
CCGCGCGGTAGCCTGGCGTTGCTCGCCGCGGCGCGTGCCTGGGCGCTGCTGGCGGGACGCGACTATGTGATT 
CCGGAAGACGTCCAGGCGGTGTTGCCGGCGGTCGCCGGGCATCGCCTGCGCGACCAGGCGGACCCCACCGGG 
CACGGTGGCGGCGCGCTGGTGCAATGGCTGCTGCGCGAAGTCCCGGCGCTCTGA