ViewGene
Locus Name:
GeneID:
Location:

GeneID:2534
TrivialName: PA14_21790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21790
PAO1 Ortholog Locus:PA3263
Sequence Length:921
Protein Length:306
Start: 1896167
Stop: 1895247
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06651.1|AE004748_9 (AE004748) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 305/306 (99%), Positives = 305/306 (99%)
Sequence:
ATGTGGTTCCGCAATCTGCTCGTCTACCGCCTCACCCAGGATCTGCAACTGGATGCCGATTCCCTCGAGAAA
GCCCTCGGCGAAAAACCCGCCCGCCCCTGCGCCAGCCAGGAGCTGACCACCTACGGCTTCACCGCGCCGTTC
GGCAAAGGCCCGGACGCACCGCTGGTACACGTCAGCCAGGACTTCTTCCTGATCTCGGCACGCAAGGAAGAG
CGCATCCTGCCGGGCAGCGTCGTGCGTGACGCACTGAAGGAAAAGGTCGACGAGATCGAAGCCCAGCAGATG
CGCAAGGTCTACAAGAAGGAACGCGACCAGTTGAAGGACGAGATCGTCCAGACCCTGCTGCCGCGTGCTTTC
ATCCGCCGCTCCAGCACCTTCGCCGCGATCGCGCCAAGCCTCGGCCTGATCCTGGTCGACTCGGCCAGCGCG
AAGAAGGCCGAAGACCTGCTCTCGACGCTGCGCGAAGCGCTCGGCTCCCTGCCGGTACGCCCGCTGAGCGTG
AAGGTCGCGCCGACCGCGACCCTCACCGACTGGGTCAAGACCCAGGAAGCCGCCGGCGACTTCCACGTGCTC
GACGAATGCGAGCTGCGCGACACCCACGAGGACGGCGGCGTGGTCCGTTGCAAGCGCCAGGACCTGACCAGC
GAGGAAATCCAGCTGCATCTCACCGCCGGCAAGCTGGTCACCCAGTTGTCCCTGGCCTGGTCGGACAAGCTG
TCCTTCGTCCTCGACGACAAGCTGGCGGTCAAGCGCCTGCGCTTCGAAGACCTGCTGCAGGAGCAGGCGGAA
AAGGACGGCGGCGAAGACGCCCTCGGCCAGCTCGATGCCAGCTTCACCCTGATGATGCTGACCTTCGCCGAA
TTCCTTCCGGCGCTCTTCGAGGCCCTCGGCGGCGAAGAAATCCCCCAGGGCGTCTGA
Translation:
MWFRNLLVYRLTQDLQLDADSLEKALGEKPARPCASQELTTYGFTAPFGKGPDAPLVHVSQDFFLISARKEE
RILPGSVVRDALKEKVDEIEAQQMRKVYKKERDQLKDEIVQTLLPRAFIRRSSTFAAIAPSLGLILVDSASA
KKAEDLLSTLREALGSLPVRPLSVKVAPTATLTDWVKTQEAAGDFHVLDECELRDTHEDGGVVRCKRQDLTS
EEIQLHLTAGKLVTQLSLAWSDKLSFVLDDKLAVKRLRFEDLLQEQAEKDGGEDALGQLDASFTLMMLTFAE
FLPALFEALGGEEIPQGV*
AnnotationID:2542GeneID:2534
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 17:05:56
Gene Name:rdgC
Confidence Code:3
GeneProduct:putative recombination associated protein RdgC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:putative DNA recombination-dependent growth factor C
Functional Category Confidence Code:5
COGs:pfam04381,COG2974
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57363.1| (AE016870) recombination associated protein rdgC [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 306

 Score =  511 bits (1317), Expect = e-144
 Identities = 251/306 (82%), Positives = 282/306 (92%)

>dbj|BAB33867.1| (AP002551) recombination associated protein [Escherichia coli
           O157:H7]
          Length = 303

 Score =  275 bits (703), Expect = 2e-73
 Identities = 147/300 (49%), Positives = 200/300 (66%), Gaps = 1/300 (0%)

>gb|AAO08991.1|AE016798_151 (AE016798) DNA recombination-dependent growth factor C [Vibrio
           vulnificus CMCP6]
          Length = 298

 Score =  275 bits (702), Expect = 3e-73
 Identities = 139/293 (47%), Positives = 202/293 (68%), Gaps = 1/293 (0%)







 
Structural Features:
pfam04381, RdgC, Putative exonuclease, RdgC. 
CD-Length = 301 residues, 100.0% aligned
Score =  421 bits (1084), Expect = 5e-119
Identities = 182/302 (60%), Positives = 229/302 (75%), Gaps = 1/302 (0%)

COG2974, RdgC, DNA recombination-dependent growth factor C 
[DNA replication, recombination, and repair]
CD-Length = 303 residues, 100.0% aligned
Score =  408 bits (1049), Expect = 5e-115
Identities = 172/304 (56%), Positives = 223/304 (73%), Gaps = 1/304 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5071




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22217




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32280




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2534_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2534
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4225
                           PA3263_tr
                           translation of PA3263
                           306
                           99.67
                           99.67
                           0
                           1529.0
     

     
     
124618
                           gb|AAG06651.1|AE004748_9
                           (AE004748) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           306
                           99.67
                           99.67
                           0
                           1529.0
     

     
     
124619
                           gb|AAO57363.1|
                           (AE016870) recombination associated protein rdgC [Pseudomonas syringae pv. tomato str. DC3000]
                           306
                           82.02
                           92.15
                           0
                           1317.0
     

     
     
124620
                           gb|AAN67323.1|AE016358_7
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           306
                           76.79
                           88.88
                           0
                           1242.0
     

     
     
124628
                           gb|AAG54740.1|AE005218_5
                           (AE005218) orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
                           307
                           47.88
                           65.14
                           5
                           699.0
     

     






      

          
GC ORFID: 45536How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3263Glimmer Score: 

          
Start: 3057764Stop: 3058684

          
Length: 921


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3263 translation of PA3263Homolog Bit Score 593.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1524 (ORF: BLASTX 511.0), t_PA3263 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGGTTCCGCAATCTGCTCGTCTACCGCCTCACCCAGGATCTGCAACTGGATGCCGATTCCCTCGAGAAA 
GCCCTCGGCGAAAAACCCGCCCGCCCCTGCGCCAGCCAGGAGCTGACCACCTACGGCTTCACCGCGCCGTTC 
GGCAAAGGCCCGGACGCACCGCTGGTACACGTCAGCCAGGACTTCTTCCTGATCTCGGCACGCAAGGAAGAG 
CGCATCCTGCCGGGCAGCGTCGTGCGTGACGCACTGAAGGAAAAGGTCGACGAGATCGAAGCCCAGCAGATG 
CGCAAGGTCTACAAGAAGGAACGCGACCAGTTGAAGGACGAGATCGTCCAGACCCTGCTGCCGCGTGCTTTC 
ATCCGCCGCTCCAGCACCTTCGCCGCGATCGCGCCAAGCCTCGGCCTGATCCTGGTCGACTCGGCCAGCGCG 
AAGAAGGCCGAAGACCTGCTCTCGACGCTGCGCGAAGCGCTCGGCTCCCTGCCGGTACGCCCGCTGAGCGTG 
AAGGTCGCGCCGACCGCGACCCTCACCGACTGGGTCAAGACCCAGGAAGCCGCCGGCGACTTCCACGTGCTC 
GACGAATGCGAGCTGCGCGACACCCACGAGGACGGCGGCGTGGTCCGTTGCAAGCGCCAGGACCTGACCAGC 
GAGGAAATCCAGCTGCATCTCACCGCCGGCAAGCTGGTCACCCAGTTGTCCCTGGCCTGGTCGGACAAGCTG 
TCCTTCGTCCTCGACGACAAGCTGGCGGTCAAGCGCCTGCGCTTCGAAGACCTGCTGCAGGAGCAGGCGGAA 
AAGGACGGCGGCGAAGACGCCCTCGGCCAGCTCGATGCCAGCTTCACCCTGATGATGCTGACCTTCGCCGAA 
TTCCTTCCGGCGCTCTTCGAGGCCCTCGGCGGCGAAGAAATCCCCCAGGGCGTCTGA