ViewGene

Locus Name:
GeneID:
Location:

GeneID:2533
TrivialName: PA14_46910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46910
PAO1 Ortholog Locus:PA1342
Sequence Length:909
Protein Length:302
Start: 4177924
Stop: 4178832
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04731.1|AE004563_8 (AE004563) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 300/302 (99%), Positives = 302/302 (100%)
Sequence:
ATGCGTATCGCTCCCAGTCTGCTGAGCACCGCCATCGTGGCCGCTCTGTTGTCCGCTCCGGTCGTCGCTGAC
GAGCTCACCGGCACGCTGAAGAAGATCAAGGACACCGGCACCATCACCCTCGGTCACCGTGACGCTTCGATT
CCCTTCTCCTACCTCGGCACCGAGCCGGGCAAGCCGATCGGCTACTCCCACGACCTGCAACTGAAAGTGGTC
GAGGCGGTGAAGAAGGAACTCAACCTCCCCGACCTGAAGGTCCGCTATAACCTGGTCACCTCGCAGACCCGC
ATCCCGCTGGTGCAGAACGGCACCGTGGACATCGAGTGCGGCTCTACCACCAACAACGAAGAGCGCCAGAAG
CAGGTCGACTTCTCCGTCGGCATCTTCGAGGTCGGCACCCGCCTGCTGTCGAAGAAGACCGCCAACATCAAG
GACTTCGACGACCTCAAGGGCAAGAACGTGGTGACCACCGCCGGCACCACCTCCGAGCGCCTGCTCAAGGCC
ATGAACGCGGACAAGAAGATGGGCATGAACATCATCTCCGCCAAGGACCACGGCGAGTCCTTCATGATGCTC
GAGTCCGGCCGCGCGGTGGCCTTCATGATGGACGACGCGCTGCTCTACGGCGAAATGGCCAAGGCCAAGAAG
CCGGACGACTGGGTCGTCGGCGGCACCCCGCAGTCCTTCGAGATCTACGGCTGCATGGTGCGCAAGGGCGAC
GCGGCGTTCAAGAAAGTGGTCGACAAGGCCATCACCGATACCTACGCCTCCGGCGAGGTCAACAAGATCTAC
GACAAGTGGTTCACCCAGCCGATCCCGCCGAAGGGCCTGAACCTCAACTTCCCCATGAGCGAAGAGCTGAAG
AAGCTGATCGCCAGCCCGACCGACAAGGCCGCCGAGCAGATGTAA
Translation:
MRIAPSLLSTAIVAALLSAPVVADELTGTLKKIKDTGTITLGHRDASIPFSYLGTEPGKPIGYSHDLQLKVV
EAVKKELNLPDLKVRYNLVTSQTRIPLVQNGTVDIECGSTTNNEERQKQVDFSVGIFEVGTRLLSKKTANIK
DFDDLKGKNVVTTAGTTSERLLKAMNADKKMGMNIISAKDHGESFMMLESGRAVAFMMDDALLYGEMAKAKK
PDDWVVGGTPQSFEIYGCMVRKGDAAFKKVVDKAITDTYASGEVNKIYDKWFTQPIPPKGLNLNFPMSEELK
KLIASPTDKAAEQM*
AnnotationID:2541GeneID:2533
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 08:08:55
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transporter
Cell Localization:()
Synonyms:ybeJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative periplasmic binding transport protein
Functional Category Confidence Code:5
COGs:pfam00497,smart00062,COG0834
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57627.1| (AE016871) amino acid ABC transporter, periplasmic amino
           acid-binding protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 308

 Score =  491 bits (1265), Expect = e-138
 Identities = 240/300 (80%), Positives = 266/300 (88%)

>gb|AAN66696.1|AE016297_10 (AE016778) amino acid ABC transporter, periplasmic amino
           acid-binding protein [Pseudomonas putida KT2440]
          Length = 306

 Score =  452 bits (1163), Expect = e-126
 Identities = 231/304 (75%), Positives = 262/304 (86%), Gaps = 5/304 (1%)

>gb|AAN79212.1|AE016757_116 (AE016757) Glutamate/aspartate Periplasmic binding protein
           precursor [Escherichia coli CFT073]
          Length = 325

 Score =  341 bits (875), Expect = 3e-93
 Identities = 176/295 (59%), Positives = 209/295 (70%), Gaps = 1/295 (0%)
Structural Features:
pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.
CD-Length = 224 residues, 100.0% aligned
Score =  163 bits (414), Expect = 2e-41
Identities = 80/234 (34%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
CD-Length = 222 residues, 100.0% aligned
Score =  155 bits (392), Expect = 8e-39
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 12/234 (5%)

COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain 
[Amino acid transport and metabolism / Signal transduction mechanisms]
CD-Length = 275 residues,  97.5% aligned
Score =  158 bits (399), Expect = 1e-39
Identities = 90/275 (32%), Positives = 129/275 (46%), Gaps = 12/275 (4%)
Genomic Context:
Comment:
ReferenceID:5069
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22215
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37473
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2533_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2533

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4223 PA1342_tr translation of PA1342 302 99.33 99.99 0 1529.0
124579 gb|AAG04731.1|AE004563_8 (AE004563) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1] 302 99.33 99.99 0 1529.0
124580 gb|AAO57627.1| (AE016871) amino acid ABC transporter, periplasmic amino acid-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 308 77.92 86.36 6 1264.0
124581 gb|AAN66696.1|AE016297_10 (AE016778) amino acid ABC transporter, periplasmic amino acid-binding protein [Pseudomonas putida KT2440] 308 75.00 85.06 8 1169.0
124582 gb|AAQ57799.1| (AE016910) probable amino acid ABC transporter, periplasmic amino acid-binding protein [Chromobacterium violaceum ATCC 12472] 305 73.11 82.29 6 1129.0
GC ORFID: 45535How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1342Glimmer Score:
Start: 775985Stop: 775077
Length: 909
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1342 translation of PA1342Homolog Bit Score 593.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6130 (ORF: BLASTX 471.0), psyr_15may02_Scaffold5_revised_gene6129 (ORF: BLASTX 471.0), psyr_15may02_Scaffold1_revised_gene299 (ORF: BLASTX 426.0), t_PA5082 (ORF: BLASTX 366.0), t_PA1342 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTATCGCTCCCAGTCTGCTGAGCACCGCCATCGTGGCCGCTCTGTTGTCCGCTCCGGTCGTCGCTGAC
GAGCTCACCGGCACGCTGAAGAAGATCAAGGACACCGGCACCATCACCCTCGGTCACCGTGACGCTTCGATT
CCCTTCTCCTACCTCGGCACCGAGCCGGGCAAGCCGATCGGCTACTCCCACGACCTGCAACTGAAAGTGGTC
GAGGCGGTGAAGAAGGAACTCAACCTCCCCGACCTGAAGGTCCGCTATAACCTGGTCACCTCGCAGACCCGC
ATCCCGCTGGTGCAGAACGGCACCGTGGACATCGAGTGCGGCTCTACCACCAACAACGAAGAGCGCCAGAAG
CAGGTCGACTTCTCCGTCGGCATCTTCGAGGTCGGCACCCGCCTGCTGTCGAAGAAGACCGCCAACATCAAG
GACTTCGACGACCTCAAGGGCAAGAACGTGGTGACCACCGCCGGCACCACCTCCGAGCGCCTGCTCAAGGCC
ATGAACGCGGACAAGAAGATGGGCATGAACATCATCTCCGCCAAGGACCACGGCGAGTCCTTCATGATGCTC
GAGTCCGGCCGCGCGGTGGCCTTCATGATGGACGACGCGCTGCTCTACGGCGAAATGGCCAAGGCCAAGAAG
CCGGACGACTGGGTCGTCGGCGGCACCCCGCAGTCCTTCGAGATCTACGGCTGCATGGTGCGCAAGGGCGAC
GCGGCGTTCAAGAAAGTGGTCGACAAGGCCATCACCGATACCTACGCCTCCGGCGAGGTCAACAAGATCTAC
GACAAGTGGTTCACCCAGCCGATCCCGCCGAAGGGCCTGAACCTCAACTTCCCCATGAGCGAAGAGCTGAAG
AAGCTGATCGCCAGCCCGACCGACAAGGCCGCCGAGCAGATGTAA