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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG04731.1|AE004563_8 (AE004563) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 300/302 (99%), Positives = 302/302 (100%)
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Sequence:
ATGCGTATCGCTCCCAGTCTGCTGAGCACCGCCATCGTGGCCGCTCTGTTGTCCGCTCCGGTCGTCGCTGAC
GAGCTCACCGGCACGCTGAAGAAGATCAAGGACACCGGCACCATCACCCTCGGTCACCGTGACGCTTCGATT
CCCTTCTCCTACCTCGGCACCGAGCCGGGCAAGCCGATCGGCTACTCCCACGACCTGCAACTGAAAGTGGTC
GAGGCGGTGAAGAAGGAACTCAACCTCCCCGACCTGAAGGTCCGCTATAACCTGGTCACCTCGCAGACCCGC
ATCCCGCTGGTGCAGAACGGCACCGTGGACATCGAGTGCGGCTCTACCACCAACAACGAAGAGCGCCAGAAG
CAGGTCGACTTCTCCGTCGGCATCTTCGAGGTCGGCACCCGCCTGCTGTCGAAGAAGACCGCCAACATCAAG
GACTTCGACGACCTCAAGGGCAAGAACGTGGTGACCACCGCCGGCACCACCTCCGAGCGCCTGCTCAAGGCC
ATGAACGCGGACAAGAAGATGGGCATGAACATCATCTCCGCCAAGGACCACGGCGAGTCCTTCATGATGCTC
GAGTCCGGCCGCGCGGTGGCCTTCATGATGGACGACGCGCTGCTCTACGGCGAAATGGCCAAGGCCAAGAAG
CCGGACGACTGGGTCGTCGGCGGCACCCCGCAGTCCTTCGAGATCTACGGCTGCATGGTGCGCAAGGGCGAC
GCGGCGTTCAAGAAAGTGGTCGACAAGGCCATCACCGATACCTACGCCTCCGGCGAGGTCAACAAGATCTAC
GACAAGTGGTTCACCCAGCCGATCCCGCCGAAGGGCCTGAACCTCAACTTCCCCATGAGCGAAGAGCTGAAG
AAGCTGATCGCCAGCCCGACCGACAAGGCCGCCGAGCAGATGTAA |
Translation:
MRIAPSLLSTAIVAALLSAPVVADELTGTLKKIKDTGTITLGHRDASIPFSYLGTEPGKPIGYSHDLQLKVV
EAVKKELNLPDLKVRYNLVTSQTRIPLVQNGTVDIECGSTTNNEERQKQVDFSVGIFEVGTRLLSKKTANIK
DFDDLKGKNVVTTAGTTSERLLKAMNADKKMGMNIISAKDHGESFMMLESGRAVAFMMDDALLYGEMAKAKK
PDDWVVGGTPQSFEIYGCMVRKGDAAFKKVVDKAITDTYASGEVNKIYDKWFTQPIPPKGLNLNFPMSEELK
KLIASPTDKAAEQM* |
AnnotationID:2541 | GeneID:2533 |
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Modification Date/Time: |
2005-02-23 08:08:55 |
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GeneProduct: | putative binding protein component of ABC transporter |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (27) Transport of small molecules |
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Alternate Gene Product Name: | putative periplasmic binding transport protein |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAO57627.1| (AE016871) amino acid ABC transporter, periplasmic amino
acid-binding protein [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 308
Score = 491 bits (1265), Expect = e-138
Identities = 240/300 (80%), Positives = 266/300 (88%)
>gb|AAN66696.1|AE016297_10 (AE016778) amino acid ABC transporter, periplasmic amino
acid-binding protein [Pseudomonas putida KT2440]
Length = 306
Score = 452 bits (1163), Expect = e-126
Identities = 231/304 (75%), Positives = 262/304 (86%), Gaps = 5/304 (1%)
>gb|AAN79212.1|AE016757_116 (AE016757) Glutamate/aspartate Periplasmic binding protein
precursor [Escherichia coli CFT073]
Length = 325
Score = 341 bits (875), Expect = 3e-93
Identities = 176/295 (59%), Positives = 209/295 (70%), Gaps = 1/295 (0%) |
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Structural Features: | pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.
CD-Length = 224 residues, 100.0% aligned
Score = 163 bits (414), Expect = 2e-41
Identities = 80/234 (34%), Positives = 112/234 (47%), Gaps = 12/234 (5%)
smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
CD-Length = 222 residues, 100.0% aligned
Score = 155 bits (392), Expect = 8e-39
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 12/234 (5%)
COG0834, HisJ, ABC-type amino acid transport/signal transduction systems,
periplasmic component/domain
[Amino acid transport and metabolism / Signal transduction mechanisms]
CD-Length = 275 residues, 97.5% aligned
Score = 158 bits (399), Expect = 1e-39
Identities = 90/275 (32%), Positives = 129/275 (46%), Gaps = 12/275 (4%) |
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