ViewGene

Locus Name:
GeneID:
Location:

GeneID:2532
TrivialName: PA14_52210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52210
PAO1 Ortholog Locus:PA0932
Sequence Length:900
Protein Length:299
Start: 4630849
Stop: 4629950
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04321.1|AE004527_8 (AE004527) cysteine synthase B [Pseudomonas aeruginosa PAO1]
Identities = 299/299 (100%), Positives = 299/299 (100%)
Sequence:
ATGACCGTGCAGTACCCGACTATCGCCGACTGCGTTGGCAATACCCCTCTGGTGCGTCTGCAGCGCCTTCCC
GGGGAAACCTCCAATACCCTGCTGGTGAAGCTCGAAGGCAACAACCCCGCGGGATCGGTGAAGGACCGCCCG
GCCCTGTCGATGATCACCCGTGCCGAACTGCGCGGCGACATCCGCCCCGGCGATACGCTGATCGAGGCTACT
TCCGGCAACACCGGCATCGCCCTGGCCATGGCGGCGGCGATCAAGGGTTACAAGATGATCCTGATCATGCCG
GACAACTCCACGGCTGAACGCAAGGCGGCGATGACCGCCTATGGCGCCGAGCTTATTCTGGTCAGCAAGGAA
GAGGGCATGGAGGGCGCGCGCGATCTGGCCGACAAGCTGCAGCGCGAAGGCCGCGGCAAGGTTCTCGACCAG
TTCGCCAATGGCGACAACCCGGAAGCCCATTACCACAGCACCGGCCCGGAAATCTGGCAGCAGACCGGCGGC
AGCATCACCCATTTCGTCAGCTCCATGGGCACCACCGGGACCATCATGGGCGTATCGCGCTACCTCAAGGAG
CAGAACCCGGCGGTGCAGATCGTCGGCCTGCAACCCATGGAGGGCTCGGCCATCCCGGGAATCCGACGCTGG
CCGCAGGAATACCTGCCGAAGATCTATGACGCCAGTCGCGTCGACCGGGTCGTCGACATGCACCAGGACGAA
GCGGAGGACATCATGCGCCGGCTGGCCCGCGAGGAAGGCATCTTCTGCGGCGTGTCCTCCGGCGGGGCGGTG
GCGGCGATGCTGCGCCTGTCCCGCGAACTGGAGAATGCCGTGCTGGTGGCGATCATCTGCGACCGCGGCGAC
CGCTACCTGTCTTCCGGCGTCTATGACCCGCGCTGA
Translation:
MTVQYPTIADCVGNTPLVRLQRLPGETSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDTLIEAT
SGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEGARDLADKLQREGRGKVLDQ
FANGDNPEAHYHSTGPEIWQQTGGSITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPMEGSAIPGIRRW
PQEYLPKIYDASRVDRVVDMHQDEAEDIMRRLAREEGIFCGVSSGGAVAAMLRLSRELENAVLVAIICDRGD
RYLSSGVYDPR*
AnnotationID:2540GeneID:2532
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 17:05:44
Gene Name:cysM
Confidence Code:2
GeneProduct:cysteine synthase B
Cell Localization:()
Synonyms:PA0932
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:O-acetylserine sulfhydrylase B 
Functional Category Confidence Code:5
COGs:COG0031, pfam00291
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Cysteine metabolism; Selenoamino acid metabolism; Sulfur metabolism 
Homology:
Structural Features:
COG0031, CysK, Cysteine synthase. Score: 367, 8e-103
pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Score: 224, 1e-59
Genomic Context:
Comment:
ReferenceID:5067
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22213
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2532

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4221 PA0932_tr translation of PA0932 299 99.99 99.99 0 1528.0
124457 gb|AAG04321.1|AE004527_8 (AE004527) cysteine synthase B [Pseudomonas aeruginosa PAO1] 299 99.99 99.99 0 1528.0
124458 gb|AAN67275.1|AE016354_2 (AE016780) cysteine synthase B [Pseudomonas putida KT2440] 299 89.96 95.98 0 1391.0
124459 gb|AAO55212.1| (AE016861) cysteine synthase B [Pseudomonas syringae pv. tomato str. DC3000] 300 85.00 93.00 1 1331.0
124460 gb|AAF93705.1| (AE004139) cysteine synthase B [Vibrio cholerae O1 biovar eltor str. N16961] 299 73.24 85.28 4 1122.0
GC ORFID: 45534How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0932Glimmer Score:
Start: 323058Stop: 323957
Length: 900
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0932 translation of PA0932Homolog Bit Score 593.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6451 (ORF: BLASTX 525.0), t_PA2709 (ORF: BLASTX 220.0), psyr_15may02_Scaffold10_revised_gene1747 (ORF: BLASTX 214.0), t_PA0932 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGTGCAGTACCCGACTATCGCCGACTGCGTTGGCAATACCCCTCTGGTGCGTCTGCAGCGCCTTCCC
GGGGAAACCTCCAATACCCTGCTGGTGAAGCTCGAAGGCAACAACCCCGCGGGATCGGTGAAGGACCGCCCG
GCCCTGTCGATGATCACCCGTGCCGAACTGCGCGGCGACATCCGCCCCGGCGATACGCTGATCGAGGCTACT
TCCGGCAACACCGGCATCGCCCTGGCCATGGCGGCGGCGATCAAGGGTTACAAGATGATCCTGATCATGCCG
GACAACTCCACGGCTGAACGCAAGGCGGCGATGACCGCCTATGGCGCCGAGCTTATTCTGGTCAGCAAGGAA
GAGGGCATGGAGGGCGCGCGCGATCTGGCCGACAAGCTGCAGCGCGAAGGCCGCGGCAAGGTTCTCGACCAG
TTCGCCAATGGCGACAACCCGGAAGCCCATTACCACAGCACCGGCCCGGAAATCTGGCAGCAGACCGGCGGC
AGCATCACCCATTTCGTCAGCTCCATGGGCACCACCGGGACCATCATGGGCGTATCGCGCTACCTCAAGGAG
CAGAACCCGGCGGTGCAGATCGTCGGCCTGCAACCCATGGAGGGCTCGGCCATCCCGGGAATCCGACGCTGG
CCGCAGGAATACCTGCCGAAGATCTATGACGCCAGTCGCGTCGACCGGGTCGTCGACATGCACCAGGACGAA
GCGGAGGACATCATGCGCCGGCTGGCCCGCGAGGAAGGCATCTTCTGCGGCGTGTCCTCCGGCGGGGCGGTG
GCGGCGATGCTGCGCCTGTCCCGCGAACTGGAGAATGCCGTGCTGGTGGCGATCATCTGCGACCGCGGCGAC
CGCTACCTGTCTTCCGGCGTCTATGACCCGCGCTGA