ViewGene
Locus Name:
GeneID:
Location:

GeneID:2530
TrivialName: PA14_13300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13300
PAO1 Ortholog Locus:PA3912
Sequence Length:891
Protein Length:296
Start: 1143008
Stop: 1143898
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07299.1|AE004808_9 (AE004808) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 294/296 (99%), Positives = 295/296 (99%)
Sequence:
ATGAAACTGAGCCTGGGACCGCTGCTGTTCTACTGGGACAAGCGGCAGATATTCGATTTCTACGCCGAGATG
GCTAGCCAGCCGCTCGACGTCATCTACCTCGGCGAGACCGTCTGCGCCAAGCGCCGGGCGCTGTCCCTGAAC
GATTGGCAGGCGCTGGCCCGCGAGCTGGCGCAGGCGACCCGTGCCGAGCTGGTGCTCTCCGGGCTGGCGCTG
ATCGAGGCCGCTTCGGAGCTGTCCAGCCTGCGCCGGCTATGCGAGAACGGCGAACTCCGGGTCGAGGCCAAC
GACATGGCCGCCGTCTATTACCTCAGCCAGCGCGGCGTGCCCTTTGTCGGCGGTCCGGCGCTGAACCTCTAC
AACGGTCATGCCCTGGCCGAACTGTATTCCTGGGGCATGCGCCGCTGGATTCCGCCGGTGGAAGTCTCCGGC
AAGCTGCTGCGCGGGGTGCTCGACCAGGCTGCGCAGCTGGGCCTGGAGCAATTGCAGACCGAGGTCTTCGCC
TACGGTCACCTGCCGCTGGCCTACTCGGCGCGCTGCTTCACCGCGCGGGCGGAGAACCGGCCCAAGGACGAC
TGTCAGTTCTGCTGCCAGCAGTATCCCGAAGGTATTCCGCTGCTCAGCCAGGAGGGCGAGGCGCTGTTCACC
CTCAACGGCATCCAGACCATGTCCGGCAAGGTCAGCAACCTGCTGGCCGACTACCGCTCGCTGGAACATAGC
GGCGCCGACCTGCTACGCCTGAGCCCTCGGGCGCAGGGCATGGCCGAGGTGATCGCGGCCTTCGACCGGGTA
CGCCAGGGTGCCGCTCCGCCGCTCGCCGTGGAAGGCTGCAACGGCTACTGGCACGGCCGGCCGGGGATGCTG
CGGGCAGAGGAGGCGGGGCTATGCTGA
Translation:
MKLSLGPLLFYWDKRQIFDFYAEMASQPLDVIYLGETVCAKRRALSLNDWQALARELAQATRAELVLSGLAL
IEAASELSSLRRLCENGELRVEANDMAAVYYLSQRGVPFVGGPALNLYNGHALAELYSWGMRRWIPPVEVSG
KLLRGVLDQAAQLGLEQLQTEVFAYGHLPLAYSARCFTARAENRPKDDCQFCCQQYPEGIPLLSQEGEALFT
LNGIQTMSGKVSNLLADYRSLEHSGADLLRLSPRAQGMAEVIAAFDRVRQGAAPPLAVEGCNGYWHGRPGML
RAEEAGLC*
AnnotationID:2538GeneID:2530
AnnotatorUID: urbach
Modification Date/Time: 2004-03-14 20:08:54
Gene Name:
Confidence Code:3
GeneProduct:putative peptidase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0826, pfam01136
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
Collagenase and related proteases






   
Genomic Context:






   
Comment:


















    ReferenceID:5063




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17098




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2530_CDD.html


    		




 
URL:

















    ReferenceID:22209




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2530
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4218
                           PA3912_tr
                           translation of PA3912
                           296
                           99.32
                           99.66
                           0
                           1532.0
     

     
     
124397
                           gb|AAG07299.1|AE004808_9
                           (AE004808) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           296
                           99.32
                           99.66
                           0
                           1532.0
     

     
     
124410
                           gb|AAP18481.1|
                           (AE016989) hypothetical protein S3417 [Shigella flexneri 2a str. 2457T]
                           303
                           48.51
                           63.69
                           18
                           683.0
     

     
     
124411
                           gb|AAN44667.1|AE015331_9
                           (AE015331) orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
                           303
                           48.51
                           63.69
                           18
                           683.0
     

     
     
124398
                           dbj|BAB37463.1|
                           (AP002564) hypothetical protein [Escherichia coli O157:H7]
                           309
                           48.22
                           63.10
                           24
                           700.0
     

     






      

          
GC ORFID: 45532How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3912Glimmer Score: 

          
Start: 3810930Stop: 3810040

          
Length: 891


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3912 translation of PA3912Homolog Bit Score 594.0

          
Other Homologs:  t_PA3912 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTGAGCCTGGGACCGCTGCTGTTCTACTGGGACAAGCGGCAGATATTCGATTTCTACGCCGAGATG 
GCTAGCCAGCCGCTCGACGTCATCTACCTCGGCGAGACCGTCTGCGCCAAGCGCCGGGCGCTGTCCCTGAAC 
GATTGGCAGGCGCTGGCCCGCGAGCTGGCGCAGGCGACCCGTGCCGAGCTGGTGCTCTCCGGGCTGGCGCTG 
ATCGAGGCCGCTTCGGAGCTGTCCAGCCTGCGCCGGCTATGCGAGAACGGCGAACTCCGGGTCGAGGCCAAC 
GACATGGCCGCCGTCTATTACCTCAGCCAGCGCGGCGTGCCCTTTGTCGGCGGTCCGGCGCTGAACCTCTAC 
AACGGTCATGCCCTGGCCGAACTGTATTCCTGGGGCATGCGCCGCTGGATTCCGCCGGTGGAAGTCTCCGGC 
AAGCTGCTGCGCGGGGTGCTCGACCAGGCTGCGCAGCTGGGCCTGGAGCAATTGCAGACCGAGGTCTTCGCC 
TACGGTCACCTGCCGCTGGCCTACTCGGCGCGCTGCTTCACCGCGCGGGCGGAGAACCGGCCCAAGGACGAC 
TGTCAGTTCTGCTGCCAGCAGTATCCCGAAGGTATTCCGCTGCTCAGCCAGGAGGGCGAGGCGCTGTTCACC 
CTCAACGGCATCCAGACCATGTCCGGCAAGGTCAGCAACCTGCTGGCCGACTACCGCTCGCTGGAACATAGC 
GGCGCCGACCTGCTACGCCTGAGCCCTCGGGCGCAGGGCATGGCCGAGGTGATCGCGGCCTTCGACCGGGTA 
CGCCAGGGTGCCGCTCCGCCGCTCGCCGTGGAAGGCTGCAACGGCTACTGGCACGGCCGGCCGGGGATGCTG 
CGGGCAGAGGAGGCGGGGCTATGCTGA