ViewGene

Locus Name:
GeneID:
Location:

GeneID: 253

TrivialName: PA14_67220

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_67220

PAO1 Ortholog Locus: PA5089

Sequence Length: 2238

Protein Length: 745

Start: 6001735

Stop: 5999498

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08474.1|AE004921_11 (AE004921) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 718/745 (96%), Positives = 725/745 (97%)

Sequence:

ATGAGCGACCTGTACAAACCGCAGACCCTCAAGCTGTACGCGCAACAGGCCGGCAGCGTCCGGCTGACCCTC
GACTGGTTCGCCAACAAGGCTTTCTACCCGCCGCGCGCGGGTGTGCACATCAAGCCGCTGATCAATGGCCAG
GCGGCCTTCGACGCGGTGCATGCGGCGATGGAAGCGGCCCGGCACAGCATCGACATCATCACCTGGGGCTTC
GACCCGGCCATGCGTTTCAAACGCCCCGACGGACCGCGAATCGGCGAATTGCTGCAGACGAAGGGCCGCGAA
GGGGTGCAGGCGCGGGTGCTGGTCTGGAGCAACCAGCTCGCCAGGCTCAAGGAAAACACCATCCCCGGGGCC
GGCGTCGGCGGTTCCGGCGGCACCTGGGCGGGCTCGGGCGTCGCCAGCGGCAGCGCAGTGGACAACGAGGTG
CTGCGGCTGGAGCAGCGGCGCCAGCATAACCTCAACCTCATCGCGCGGCAGCAGGAAGCCCTGGAACGCTCG
GAACGGCTGCACCGCGAAGGCAGGCTGCCGAGCTTCGACCCGCGGGGCGCCGCCCACGCGCGGGCGCGCATC
GCCGAGCTGGAGGCGGAGAACGCCGAGATCCAGCGCACTCTCGACAGCAGCGAGGCCCAGGGCTACGGCGGC
AAGCGCGGTTCCGGCGGCACCCGCCAGGATCCCTGGGGGCAGATATTCACCCGCGACTGGTTCAAGGCGGTA
CGCGGCGGTGGGTTGCAGAACGTCGAGTTCCGTACCCGCGACTTCGAGCAGACGGCCAGGCCGGTGATGAAC
GGCGAGCAAGTGCGCCTCGTCAACGGGCGGCTGCAAAGCCTGATCCACCTGTTGCGCGCCGATGGCAACGAC
GACCTGGGCATCGGCCAGTTGCTGGTACTCACCCAGTTCGCCAGCCATCACCAGAAGATGGTCCTGGTCGAC
TATGGCAGCCCGCAGGCCATCGGCTTCGTCATGGGTCACAACATGCACCGCAACTACTGGGACACCAGCGCC
CACCTGTTCGACGACCGCGCCGCCGGTCGCGATCCCGGGTTCGGGCCCTGGCAGGATATCTCCATGCAGGTC
CAGGGACCGGTGCTGGCCGACCTCAGCCGCAACTTCAGCGAGGCCTGGGACCTCGAGACGCCGTGGTACAAG
CGCTGGTTCTCGACGCCATCGCTGACCGCCGAGCGCGACGCCTTGCCGCTGCCGAAGATCGCCACGCCCGCC
AGCAACAGCGTCGCGCAGATTTGCCGGACCCAGCCGCAGGACGACGAGCGCTCGATCCTGGAGCACTATCTC
AAGGCCCTGGGCAATGCCACCGACTACGTCTACATGGAAAACCAGTACTTCCGTTATGCCGGCTTCGCCGAG
CGCCTGCGGAAGACTGCGCAGGTGCGCAAGGCCCGGGGCGTGCCCGGCGACCTGTACCTGTTCGTCGTGACC
AACACCCCCGACTCCAGCGACGCCTCGAAGACCACCTACGACATGATGAAAGGCCTGGGCCAGGAGCAACTG
ATGCCGCAGGTACAGCGCGACCTGGCGCATGACTTGCGGGAAAAGCGGGAGCAGTTGAAGCAGGTCAGGGAA
AACCTACATCCCGATCCCTATGTCCGGCGCGGCCAGGAAAACAACATCGAACGGCTGGAGCGCAAGATCGAG
GCGCTCGAAGAGAAAGGTGTGACGCCGGAAGTCGAGCAACGCCTCGGCGATCTCGGCGCGCAGGAGATTCCC
GGACTGGCGAAGAACACCGGCGAGGACGACAAGCCCTATCAACTCGCCGAAGCACCCGGCCTCAAGGTGGTC
GTCGCCACCCTGGCCACCAGCGACCCCGCCCCCGGCAGCCCGCCGCCAGCGCGCCTGTCCGCCGAAGCCGAG
GCCGCCCTCGGGGCACCACCGTTGAAGGCACGCTACAAGCACATCTACGTGCACTCCAAGCTGCTGCTGGTG
GACGACCTCTATACCCTGCTCAGCTCGGCCAATATCAATGTCCGCAGCATGCATGGCGACAGCGAGTTGGGG
ATTGCCCAGCCCAATCCGGATTTGGCGAGGGCGATGCGGGAGGAGTTGTGGGGGGCGCATGTTGGGAGGTTG
GCCGAAACGACCGAAAAAAACTTCGAATTGTGGAATCAGAAGATGGATGATAACTGGAAGGCCCAGGTGGCA
GATGAGCCTTTTACTTCGCACTTGCTGCGCTTCTGGGATGTCACTACACCCTATAGTCAAAATCTTACGGTG
GACTGA

Translation:

MSDLYKPQTLKLYAQQAGSVRLTLDWFANKAFYPPRAGVHIKPLINGQAAFDAVHAAMEAARHSIDIITWGF
DPAMRFKRPDGPRIGELLQTKGREGVQARVLVWSNQLARLKENTIPGAGVGGSGGTWAGSGVASGSAVDNEV
LRLEQRRQHNLNLIARQQEALERSERLHREGRLPSFDPRGAAHARARIAELEAENAEIQRTLDSSEAQGYGG
KRGSGGTRQDPWGQIFTRDWFKAVRGGGLQNVEFRTRDFEQTARPVMNGEQVRLVNGRLQSLIHLLRADGND
DLGIGQLLVLTQFASHHQKMVLVDYGSPQAIGFVMGHNMHRNYWDTSAHLFDDRAAGRDPGFGPWQDISMQV
QGPVLADLSRNFSEAWDLETPWYKRWFSTPSLTAERDALPLPKIATPASNSVAQICRTQPQDDERSILEHYL
KALGNATDYVYMENQYFRYAGFAERLRKTAQVRKARGVPGDLYLFVVTNTPDSSDASKTTYDMMKGLGQEQL
MPQVQRDLAHDLREKREQLKQVRENLHPDPYVRRGQENNIERLERKIEALEEKGVTPEVEQRLGDLGAQEIP
GLAKNTGEDDKPYQLAEAPGLKVVVATLATSDPAPGSPPPARLSAEAEAALGAPPLKARYKHIYVHSKLLLV
DDLYTLLSSANINVRSMHGDSELGIAQPNPDLARAMREELWGAHVGRLAETTEKNFELWNQKMDDNWKAQVA
DEPFTSHLLRFWDVTTPYSQNLTVD*

AnnotationID:263 GeneID:253

AnnotatorUID: diggins

Modification Date/Time: 2005-03-15 06:06:20

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA5089

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:509

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17651

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34932

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 253_cdd.html

URL:

Homologs By Global Alignment

Gene ID:253

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

428 PA5089_tr translation of PA5089 745 96.37 97.31 0 3768.0

23419 gb|AAG08474.1|AE004921_11 (AE004921) hypothetical protein PA5089 [Pseudomonas aeruginosa PAO1] 745 96.37 97.31 0 3768.0

GC ORFID: `43255`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5089`	Glimmer Score:
Start: `5265420`	Stop: `5263183`
Length: `2238`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5089 translation of PA5089`	Homolog Bit Score `1456.0`
Other Homologs: `t_PA5089 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCGACCTGTACAAACCGCAGACCCTCAAGCTGTACGCGCAACAGGCCGGCAGCGTCCGGCTGACCCTC GACTGGTTCGCCAACAAGGCTTTCTACCCGCCGCGCGCGGGTGTGCACATCAAGCCGCTGATCAATGGCCAG GCGGCCTTCGACGCGGTGCATGCGGCGATGGAAGCGGCCCGGCACAGCATCGACATCATCACCTGGGGCTTC GACCCGGCCATGCGTTTCAAACGCCCCGACGGACCGCGAATCGGCGAATTGCTGCAGACGAAGGGCCGCGAA GGGGTGCAGGCGCGGGTGCTGGTCTGGAGCAACCAGCTCGCCAGGCTCAAGGAAAACACCATCCCCGGGGCC GGCGTCGGCGGTTCCGGCGGCACCTGGGCGGGCTCGGGCGTCGCCAGCGGCAGCGCAGTGGACAACGAGGTG CTGCGGCTGGAGCAGCGGCGCCAGCATAACCTCAACCTCATCGCGCGGCAGCAGGAAGCCCTGGAACGCTCG GAACGGCTGCACCGCGAAGGCAGGCTGCCGAGCTTCGACCCGCGGGGCGCCGCCCACGCGCGGGCGCGCATC GCCGAGCTGGAGGCGGAGAACGCCGAGATCCAGCGCACTCTCGACAGCAGCGAGGCCCAGGGCTACGGCGGC AAGCGCGGTTCCGGCGGCACCCGCCAGGATCCCTGGGGGCAGATATTCACCCGCGACTGGTTCAAGGCGGTA CGCGGCGGTGGGTTGCAGAACGTCGAGTTCCGTACCCGCGACTTCGAGCAGACGGCCAGGCCGGTGATGAAC GGCGAGCAAGTGCGCCTCGTCAACGGGCGGCTGCAAAGCCTGATCCACCTGTTGCGCGCCGATGGCAACGAC GACCTGGGCATCGGCCAGTTGCTGGTACTCACCCAGTTCGCCAGCCATCACCAGAAGATGGTCCTGGTCGAC TATGGCAGCCCGCAGGCCATCGGCTTCGTCATGGGTCACAACATGCACCGCAACTACTGGGACACCAGCGCC CACCTGTTCGACGACCGCGCCGCCGGTCGCGATCCCGGGTTCGGGCCCTGGCAGGATATCTCCATGCAGGTC CAGGGACCGGTGCTGGCCGACCTCAGCCGCAACTTCAGCGAGGCCTGGGACCTCGAGACGCCGTGGTACAAG CGCTGGTTCTCGACGCCATCGCTGACCGCCGAGCGCGACGCCTTGCCGCTGCCGAAGATCGCCACGCCCGCC AGCAACAGCGTCGCGCAGATTTGCCGGACCCAGCCGCAGGACGACGAGCGCTCGATCCTGGAGCACTATCTC AAGGCCCTGGGCAATGCCACCGACTACGTCTACATGGAAAACCAGTACTTCCGTTATGCCGGCTTCGCCGAG CGCCTGCGGAAGACTGCGCAGGTGCGCAAGGCCCGGGGCGTGCCCGGCGACCTGTACCTGTTCGTCGTGACC AACACCCCCGACTCCAGCGACGCCTCGAAGACCACCTACGACATGATGAAAGGCCTGGGCCAGGAGCAACTG ATGCCGCAGGTACAGCGCGACCTGGCGCATGACTTGCGGGAAAAGCGGGAGCAGTTGAAGCAGGTCAGGGAA AACCTACATCCCGATCCCTATGTCCGGCGCGGCCAGGAAAACAACATCGAACGGCTGGAGCGCAAGATCGAG GCGCTCGAAGAGAAAGGTGTGACGCCGGAAGTCGAGCAACGCCTCGGCGATCTCGGCGCGCAGGAGATTCCC GGACTGGCGAAGAACACCGGCGAGGACGACAAGCCCTATCAACTCGCCGAAGCACCCGGCCTCAAGGTGGTC GTCGCCACCCTGGCCACCAGCGACCCCGCCCCCGGCAGCCCGCCGCCAGCGCGCCTGTCCGCCGAAGCCGAG GCCGCCCTCGGGGCACCACCGTTGAAGGCACGCTACAAGCACATCTACGTGCACTCCAAGCTGCTGCTGGTG GACGACCTCTATACCCTGCTCAGCTCGGCCAATATCAATGTCCGCAGCATGCATGGCGACAGCGAGTTGGGG ATTGCCCAGCCCAATCCGGATTTGGCGAGGGCGATGCGGGAGGAGTTGTGGGGGGCGCATGTTGGGAGGTTG GCCGAAACGACCGAAAAAAACTTCGAATTGTGGAATCAGAAGATGGATGATAACTGGAAGGCCCAGGTGGCA GATGAGCCTTTTACTTCGCACTTGCTGCGCTTCTGGGATGTCACTACACCCTATAGTCAAAATCTTACGGTG GACTGA