ViewGene
Locus Name:
GeneID:
Location:

GeneID:2529
TrivialName: PA14_23540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23540
PAO1 Ortholog Locus:PA3135
Sequence Length:921
Protein Length:306
Start: 2050430
Stop: 2051350
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06523.1|AE004737_9 (AE004737) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 306/306 (100%), Positives = 306/306 (100%)
Sequence:
ATGGGGCTTGATGATGCGCTGATCTTCACCCGCGTGGTGGAGTACCACAGCTTCACCCAGGCCGCGCAGAGC
CTGGGCATGCAGAAGTCCACGGTGAGCCGGCGCATCGCCCTGCTGGAGGAGCGCCTGGGCGTGCGCCTGCTC
AATCGCACCACCCGTAAGTTGCGCCTGACCGAAGTAGGGCAGGCCTACTACGAGCGCTGCCGGCAGATCATG
CACGATTTCGCCGAGGCCGAGCAGGCGGTCATGCAGTTGCAACAGGCGCCGTCGGGATTGCTGCGGATCACC
TCGCCGATAGAGTTCGGCCAGATGTTCCTCGCCAGCCTGCTGGGCGACTTCATGCGCCAGTACCCGCAGATC
ACCGCCGAGGTCGAGCTGGCCTCGCGCAGCGTCGATCCGCTGCAGGAGGGCGTCGACATCGTGATCATGGTC
GGCCAGCCGGAGGATTCCACCCTGGTGGCCCGTCGCCTGCTCTCTACCAGCCGCTGGCTCTGCGCCAGCCCC
GACTACCTGGCGGCGCACGGCACGCCGACATCGGTGGCCGAGCTTGCCGGGCATCGCGCGGTCCTTCTGTCC
ACCGACTCCCAGCGCTACTGGCCGCTTTCCGGAGACAGCCTGCCCTGCCAGCGGGTGCTGTCCTGCAACAAC
ATCACCTTCGCCCGCGAGGCGGTGGTCGCCGGTGCCGGCATTGCCGCGCTACCGGCGCTGATCTGTGCGGAG
AGCGTGCACAGCGGGCGTCTGGTGCGTTTGCTGGCGGACGTGCCGTTGCCGGTCGGCGAACTGTATGCGGTC
TATCCTTCGCGGCGTTTCCAGGCGATGAAGGTCAAGGCCTTCCTCGATTTCCTGATCAGCCGCCTGCCGGCC
GACACCGGTCGTTTACTGGAGCCGGAGGCGGCCCGCCTGATAACATCGCGCCCCTGA
Translation:
MGLDDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQAYYERCRQIM
HDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLASLLGDFMRQYPQITAEVELASRSVDPLQEGVDIVIMV
GQPEDSTLVARRLLSTSRWLCASPDYLAAHGTPTSVAELAGHRAVLLSTDSQRYWPLSGDSLPCQRVLSCNN
ITFAREAVVAGAGIAALPALICAESVHSGRLVRLLADVPLPVGELYAVYPSRRFQAMKVKAFLDFLISRLPA
DTGRLLEPEAARLITSRP*
AnnotationID:2537GeneID:2529
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 09:09:42
Gene Name:act
Confidence Code:3
GeneProduct:putative transcriptional activator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03466,COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN53604.1|AE015500_3 (AE015500) transcriptional regulator, LysR family [Shewanella
           oneidensis MR-1]
          Length = 310

 Score =  216 bits (550), Expect = 1e-55
 Identities = 123/291 (42%), Positives = 173/291 (59%), Gaps = 5/291 (1%)

>dbj|BAC48513.1| (AP005946) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 297

 Score =  213 bits (543), Expect = 9e-55
 Identities = 116/282 (41%), Positives = 170/282 (60%), Gaps = 9/282 (3%)








 
Structural Features:
pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score =  117 bits (294), Expect = 2e-27
Identities = 70/209 (33%), Positives = 90/209 (43%), Gaps = 7/209 (3%)

COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score =  151 bits (382), Expect = 8e-38
Identities = 97/297 (32%), Positives = 133/297 (44%), Gaps = 5/297 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5061




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22207




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32387




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2529_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2529
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4217
                           PA3135_tr
                           translation of PA3135
                           306
                           99.99
                           99.99
                           0
                           1532.0
     

     
     
124385
                           gb|AAG06523.1|AE004737_9
                           (AE004737) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           306
                           99.99
                           99.99
                           0
                           1532.0
     

     
     
124386
                           gb|AAD33772.1|AF139107_2
                           (AF139107) hypothetical transcriptional activator [Pseudomonas aeruginosa]
                           306
                           99.67
                           99.67
                           0
                           1525.0
     

     
     
124387
                           gb|AAN53604.1|AE015500_3
                           (AE015500) transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
                           317
                           41.00
                           57.41
                           18
                           549.0
     

     
     
124391
                           emb|CAE44827.1|
                           (BX640412) LysR-family transcriptional regulator [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           316
                           39.87
                           56.64
                           19
                           530.0
     

     






      

          
GC ORFID: 45531How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3135Glimmer Score: 

          
Start: 2903501Stop: 2902581

          
Length: 921


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3135 translation of PA3135Homolog Bit Score 594.0

          
Other Homologs:  t_PA3135 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGGCTTGATGATGCGCTGATCTTCACCCGCGTGGTGGAGTACCACAGCTTCACCCAGGCCGCGCAGAGC 
CTGGGCATGCAGAAGTCCACGGTGAGCCGGCGCATCGCCCTGCTGGAGGAGCGCCTGGGCGTGCGCCTGCTC 
AATCGCACCACCCGTAAGTTGCGCCTGACCGAAGTAGGGCAGGCCTACTACGAGCGCTGCCGGCAGATCATG 
CACGATTTCGCCGAGGCCGAGCAGGCGGTCATGCAGTTGCAACAGGCGCCGTCGGGATTGCTGCGGATCACC 
TCGCCGATAGAGTTCGGCCAGATGTTCCTCGCCAGCCTGCTGGGCGACTTCATGCGCCAGTACCCGCAGATC 
ACCGCCGAGGTCGAGCTGGCCTCGCGCAGCGTCGATCCGCTGCAGGAGGGCGTCGACATCGTGATCATGGTC 
GGCCAGCCGGAGGATTCCACCCTGGTGGCCCGTCGCCTGCTCTCTACCAGCCGCTGGCTCTGCGCCAGCCCC 
GACTACCTGGCGGCGCACGGCACGCCGACATCGGTGGCCGAGCTTGCCGGGCATCGCGCGGTCCTTCTGTCC 
ACCGACTCCCAGCGCTACTGGCCGCTTTCCGGAGACAGCCTGCCCTGCCAGCGGGTGCTGTCCTGCAACAAC 
ATCACCTTCGCCCGCGAGGCGGTGGTCGCCGGTGCCGGCATTGCCGCGCTACCGGCGCTGATCTGTGCGGAG 
AGCGTGCACAGCGGGCGTCTGGTGCGTTTGCTGGCGGACGTGCCGTTGCCGGTCGGCGAACTGTATGCGGTC 
TATCCTTCGCGGCGTTTCCAGGCGATGAAGGTCAAGGCCTTCCTCGATTTCCTGATCAGCCGCCTGCCGGCC 
GACACCGGTCGTTTACTGGAGCCGGAGGCGGCCCGCCTGATAACATCGCGCCCCTGA