ViewGene
Locus Name:
GeneID:
Location:

GeneID:2528
TrivialName: PA14_47270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47270
PAO1 Ortholog Locus:PA1312
Sequence Length:912
Protein Length:303
Start: 4211367
Stop: 4212278
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04701.1|AE004560_9 (AE004560) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 302/303 (99%), Positives = 303/303 (100%)
Sequence:
ATGGTCAGCCTCGACCGCTTCGAAACCTTTCGCGCCGTGGTCGACTGCGGTTCCCTCAGCGCCGCCGCCGAC
ACCCTCGGCCAGACGCGTGCGGTAGTCAGCTTCAACCTCAAGCGGCTGGAGGCCGAGCTGGGCGTTTCTCTG
CTCAGCCGCAGCACCCGGCGGTTGGCCCTGACCGATGCTGGCGAACGCTTCTACCAGCGCTGCGTGAAGGTG
CTCGACGAGGCGCGCCTGGCCATCGACGACGCCCGCGCCGAGCATGGCGAACTGCGTGGCAGCCTGCGCGTC
ACCACCACCCAGGAATACGGCCTGCGCCAACTGGTGCCGGCCCTGCAGGCATTCGCCCGGCTGCACCCGGCG
TTGCAGGTACAATTGTCGACCTCATCGCTGCATGCCGACCTGATTGGCGAACGCTTCGACGTCGCCATCCGC
CTGGGGCGCCTGGAGGACTCCACCCACCATGCGGTGCAACTGGCCAGCTTCGAGGTCCTGGCGGTGGCCAGC
CCGGCCTGCCTGGCGGCGCTCGGCGAACCGCCGCCGACCGACCTGGAGAGTCTGGAGCGCCTGCAGAATCTC
GGTCACAGCCGGCTGGCGGACTCCCTGCCCTGGCAAGTACGCGCCCCCGACGGCGCCCTGCGCAGCTACCGC
GGACCGCGCCATCCCATGCTGCTGGCCGACAACGCCGCGGCCCTGCGCGCCTTTGCCCTCGACGGCCTGGGT
ATCGCCGTGCTGCCGGACTGGCTGGTGCAGGCCGACTTGCGCTGCGGCGCACTGCAACGCCTGCTGGCGGAC
CACGGGTTTCCGCTCCAGGGCGTGCATGCCGTTTATCCGCCGACCCGCCACCTGCCGTCGAAGGTCCGCGCG
TTCATCGACTTCCTCAAGACTCGCCTGGGGCACCCGGACGCCGGTTAG
Translation:
MVSLDRFETFRAVVDCGSLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRLALTDAGERFYQRCVKV
LDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQVQLSTSSLHADLIGERFDVAIR
LGRLEDSTHHAVQLASFEVLAVASPACLAALGEPPPTDLESLERLQNLGHSRLADSLPWQVRAPDGALRSYR
GPRHPMLLADNAAALRAFALDGLGIAVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRA
FIDFLKTRLGHPDAG*
AnnotationID:2536GeneID:2528
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 06:06:31
Gene Name:
Confidence Code:3
GeneProduct:putative LysR family transcriptional regulator
Cell Localization:()
Synonyms:PA1312
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam00126
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL21792.1| (AE008833) putative LysR family transcriptional regulators
           [Salmonella typhimurium LT2]
          Length = 310

 Score =  263 bits (671), Expect = 1e-69
 Identities = 145/296 (48%), Positives = 194/296 (65%), Gaps = 3/296 (1%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  98.0% aligned
Score =  135 bits (341), Expect = 5e-33
Identities = 100/300 (33%), Positives = 141/300 (47%), Gaps = 13/300 (4%)

pfam00126, HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family.
CD-Length = 60 residues, 100.0% aligned
Score = 57.8 bits (140), Expect = 1e-09







   
Genomic Context:






   
Comment:


















    ReferenceID:5059




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22205




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37459




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2528_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2528
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4216
                           PA1312_tr
                           translation of PA1312
                           303
                           99.66
                           99.99
                           0
                           1532.0
     

     
     
124377
                           gb|AAG04701.1|AE004560_9
                           (AE004560) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           303
                           99.66
                           99.99
                           0
                           1532.0
     

     
     
124378
                           emb|CAD19474.1|
                           (AJ422108) hypothetical protein [Enterobacter cloacae]
                           303
                           50.82
                           65.34
                           8
                           719.0
     

     
     
124379
                           gb|AAL21792.1|
                           (AE008833) putative LysR family transcriptional regulators [Salmonella typhimurium LT2]
                           316
                           46.51
                           62.02
                           19
                           673.0
     

     
     
124380
                           gb|AAO70372.1|
                           (AE016843) possible LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           316
                           46.51
                           61.70
                           19
                           670.0
     

     






      

          
GC ORFID: 45530How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1312Glimmer Score: 

          
Start: 742542Stop: 741631

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1312 translation of PA1312Homolog Bit Score 594.0

          
Other Homologs:  t_PA1312 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCAGCCTCGACCGCTTCGAAACCTTTCGCGCCGTGGTCGACTGCGGTTCCCTCAGCGCCGCCGCCGAC 
ACCCTCGGCCAGACGCGTGCGGTAGTCAGCTTCAACCTCAAGCGGCTGGAGGCCGAGCTGGGCGTTTCTCTG 
CTCAGCCGCAGCACCCGGCGGTTGGCCCTGACCGATGCTGGCGAACGCTTCTACCAGCGCTGCGTGAAGGTG 
CTCGACGAGGCGCGCCTGGCCATCGACGACGCCCGCGCCGAGCATGGCGAACTGCGTGGCAGCCTGCGCGTC 
ACCACCACCCAGGAATACGGCCTGCGCCAACTGGTGCCGGCCCTGCAGGCATTCGCCCGGCTGCACCCGGCG 
TTGCAGGTACAATTGTCGACCTCATCGCTGCATGCCGACCTGATTGGCGAACGCTTCGACGTCGCCATCCGC 
CTGGGGCGCCTGGAGGACTCCACCCACCATGCGGTGCAACTGGCCAGCTTCGAGGTCCTGGCGGTGGCCAGC 
CCGGCCTGCCTGGCGGCGCTCGGCGAACCGCCGCCGACCGACCTGGAGAGTCTGGAGCGCCTGCAGAATCTC 
GGTCACAGCCGGCTGGCGGACTCCCTGCCCTGGCAAGTACGCGCCCCCGACGGCGCCCTGCGCAGCTACCGC 
GGACCGCGCCATCCCATGCTGCTGGCCGACAACGCCGCGGCCCTGCGCGCCTTTGCCCTCGACGGCCTGGGT 
ATCGCCGTGCTGCCGGACTGGCTGGTGCAGGCCGACTTGCGCTGCGGCGCACTGCAACGCCTGCTGGCGGAC 
CACGGGTTTCCGCTCCAGGGCGTGCATGCCGTTTATCCGCCGACCCGCCACCTGCCGTCGAAGGTCCGCGCG 
TTCATCGACTTCCTCAAGACTCGCCTGGGGCACCCGGACGCCGGTTAG