ViewGene
Locus Name:
GeneID:
Location:

GeneID:2524
TrivialName: PA14_67200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67200
PAO1 Ortholog Locus:PA5087
Sequence Length:870
Protein Length:289
Start: 5998610
Stop: 5997741
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08472.1|AE004921_9 (AE004921) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 284/289 (98%), Positives = 286/289 (98%)
Sequence:
ATGGCTATTGGACTTTGGGCCGTGCTCTGTCTTGCAGGCGTCCCCGTGATGGCCAACAGCAAACCATTTGTC
TGCGCTAATGAAAAAGACCATCTGCCGCCGTTGGATCCGCAAGCCGATGCTTGGTACCGCGAAGCAGCAGCC
TTGGCCAAGCCCGATACTCTGCGGCCCTGGGGCCGTATCGTCGAGCTTTACAGCAAGGCAGTGGAGCGCGGT
CATTGGAAGGCCATGCATAATTTGGCGAATCTTTATCGTACAGGGTGGCCCGGAGGAGTAGAAAAAGATCCG
CAGAAGGCATTGGATCTCTATCAAAAGATGATAGATCTGGATGTGCCTCAGGGGTTCTATGATATGGGGGCA
ATGATTGGTAATCGTGCCGGTGTTAAGAACCCTGCTACCGATGGTCTGACCTTCTTGGATAAAGCCGCTAGT
TTGGGGAACCCGCCAGCACTGACCGAGTTGGGTAAACTCTATATTTATGTGGCCAAGGAAAAGGAATTGGGG
CTGGCGTATACCAGTTGTGCTTCCAGTCAAGGTTATGCTCCGGCGAGCTATGAGCTTGGAAGCTACTATGAG
TTGGTTGAGCATAATTATCCAAAGGCACTTAGATACTATCAAGTCTCCGTCTCTCAAGGCGGCAGGAGTGCC
GCCTTTTTTCTCTCGCGCGTCTTCGGAAAGAGGACGCCTCCTTCAAGTGCAATGTGGTATACGCCGGATGAA
AAGCTTGAGAAATTCTACTACTCCCTCTATCTGCAAATTGATGCCGACCCCGATCTTCGTTTTCCCAATTTG
GTAAAAGATAACCCCTTGCCACCCCACCCCGTCCAGGGCTACGACGCAGCTCGACCCGACTGGAAGCCGGGT
CAGTGA
Translation:
MAIGLWAVLCLAGVPVMANSKPFVCANEKDHLPPLDPQADAWYREAAALAKPDTLRPWGRIVELYSKAVERG
HWKAMHNLANLYRTGWPGGVEKDPQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAAS
LGNPPALTELGKLYIYVAKEKELGLAYTSCASSQGYAPASYELGSYYELVEHNYPKALRYYQVSVSQGGRSA
AFFLSRVFGKRTPPSSAMWYTPDEKLEKFYYSLYLQIDADPDLRFPNLVKDNPLPPHPVQGYDAARPDWKPG
Q*
AnnotationID:2532GeneID:2524
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 06:06:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5087
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5051




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22197




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34977




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2524_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2524
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4209
                           PA5087_tr
                           translation of PA5087
                           289
                           98.26
                           98.96
                           0
                           1534.0
     

     
     
124225
                           gb|AAG08472.1|AE004921_9
                           (AE004921) hypothetical protein PA5087 [Pseudomonas aeruginosa PAO1]
                           289
                           98.26
                           98.96
                           0
                           1534.0
     

     
     
4210
                           PA5088_tr
                           translation of PA5088
                           297
                           74.74
                           81.14
                           12
                           1198.0
     

     
     
124226
                           gb|AAG08473.1|AE004921_10
                           (AE004921) hypothetical protein PA5088 [Pseudomonas aeruginosa PAO1]
                           297
                           74.74
                           81.14
                           12
                           1198.0
     

     
     
4211
                           PA5086_tr
                           translation of PA5086
                           289
                           62.97
                           68.85
                           76
                           1008.0
     

     






      

          
GC ORFID: 45526How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5087Glimmer Score: 

          
Start: 5262295Stop: 5261426

          
Length: 870


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5087 translation of PA5087Homolog Bit Score 595.0

          
Other Homologs:  t_PA5088 (ORF: BLASTX 466.0), t_PA5086 (ORF: BLASTX 393.0), t_PA5087 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTATTGGACTTTGGGCCGTGCTCTGTCTTGCAGGCGTCCCCGTGATGGCCAACAGCAAACCATTTGTC 
TGCGCTAATGAAAAAGACCATCTGCCGCCGTTGGATCCGCAAGCCGATGCTTGGTACCGCGAAGCAGCAGCC 
TTGGCCAAGCCCGATACTCTGCGGCCCTGGGGCCGTATCGTCGAGCTTTACAGCAAGGCAGTGGAGCGCGGT 
CATTGGAAGGCCATGCATAATTTGGCGAATCTTTATCGTACAGGGTGGCCCGGAGGAGTAGAAAAAGATCCG 
CAGAAGGCATTGGATCTCTATCAAAAGATGATAGATCTGGATGTGCCTCAGGGGTTCTATGATATGGGGGCA 
ATGATTGGTAATCGTGCCGGTGTTAAGAACCCTGCTACCGATGGTCTGACCTTCTTGGATAAAGCCGCTAGT 
TTGGGGAACCCGCCAGCACTGACCGAGTTGGGTAAACTCTATATTTATGTGGCCAAGGAAAAGGAATTGGGG 
CTGGCGTATACCAGTTGTGCTTCCAGTCAAGGTTATGCTCCGGCGAGCTATGAGCTTGGAAGCTACTATGAG 
TTGGTTGAGCATAATTATCCAAAGGCACTTAGATACTATCAAGTCTCCGTCTCTCAAGGCGGCAGGAGTGCC 
GCCTTTTTTCTCTCGCGCGTCTTCGGAAAGAGGACGCCTCCTTCAAGTGCAATGTGGTATACGCCGGATGAA 
AAGCTTGAGAAATTCTACTACTCCCTCTATCTGCAAATTGATGCCGACCCCGATCTTCGTTTTCCCAATTTG 
GTAAAAGATAACCCCTTGCCACCCCACCCCGTCCAGGGCTACGACGCAGCTCGACCCGACTGGAAGCCGGGT 
CAGTGA