ViewGene

Locus Name:
GeneID:
Location:

GeneID:2523
TrivialName: PA14_64140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64140
PAO1 Ortholog Locus:PA4850
Sequence Length:885
Protein Length:294
Start: 5715852
Stop: 5716736
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08235.1|AE004898_6 (AE004898) ribosomal protein L11 methyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 294/294 (100%), Positives = 294/294 (100%)
Sequence:
ATGCCCTGGTTACAAGTTCGCCTGGCCATCACCCCGGAACAGGCCGAAACCTACGAAGACGCCCTGCTCGAA
GTCGGCGCCGTCTCCGTGACCTTCATGGACGCCGAAGACCAGCCgatcttCGAGCCGGACCTCGGCACCACC
CCGCTGTGGTCGCGCACCCACCTGCTGGCGCTGTTCGAAGCGGACACCGACGAGACCGCCCTGCTCGCCCAC
CTCGCCTTGCTTACCGGCGGCGACCTGCCCGAGCACCATGTCGAGGAAATCGCCGACCAGGATTGGGAACGC
AGCTGGATGGACAACTTCCAGCCGATGCGTTTCGGCCGCCGCCTGTGGATCGTGCCGAGCTGGCACGCCGCC
CCCGAGCCGGACGCGGTCAACCTGCTGCTCGATCCGGGCCTGGCCTTCGGCACCGGCACCCACCCGACCACC
GCGCTGTGCCTGGAATGGCTCGACGGCCAGGAACTGGCCGGCCGGCAGGTGCTCGACTTCGGTTGCGGCTCG
GGAATCCTCGCCATCGCCGCGCTGCTGCTCGGCGCCGAACGGGCGGTCGGCACCGACATCGATCCACAGGCC
CTGGAAGCCTCGCGCGACAATGCCTCGCGCAACGGTATCGAGCCCGCGCGGTTCCCGGTCTACCTGCCGGCG
GACCTGCCGCAGCGACAGGCCGACGTGCTGGTCGCCAATATCCTCGCCGGCCCGCTGGTTTCCCTCGCCCCG
CAACTGACCGGCCTGGTACGTCCCGGCGGCCTGCTGGCGCTGTCCGGCATCCTCGCCGAGCAGGCCGAGGAG
GTCCGCGCGGCCTACTCCGCACACTTCGATCTCGACCCGACCGCCGAGCGCGAAGGCTGGATCCGCATCAGC
GGCCGCCGCCGCGCCGATTGA
Translation:
MPWLQVRLAITPEQAETYEDALLEVGAVSVTFMDAEDQPIFEPDLGTTPLWSRTHLLALFEADTDETALLAH
LALLTGGDLPEHHVEEIADQDWERSWMDNFQPMRFGRRLWIVPSWHAAPEPDAVNLLLDPGLAFGTGTHPTT
ALCLEWLDGQELAGRQVLDFGCGSGILAIAALLLGAERAVGTDIDPQALEASRDNASRNGIEPARFPVYLPA
DLPQRQADVLVANILAGPLVSLAPQLTGLVRPGGLLALSGILAEQAEEVRAAYSAHFDLDPTAEREGWIRIS
GRRRAD*
AnnotationID:2531GeneID:2523
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 06:06:51
Gene Name:prmA
Confidence Code:2
GeneProduct:ribosomal protein L11 methyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:methylase for 50S ribosomal subunit protein L11
Functional Category Confidence Code:5
COGs:pfam06325,COG2264
Secondary Functional Category(ies):
EC Number:2.1.1.-
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58291.1| (AE016873) ribosomal protein L11 methyltransferase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 292

 Score =  492 bits (1267), Expect = e-139
 Identities = 241/292 (82%), Positives = 260/292 (89%)

>gb|AAN70387.1|AE016680_7 (AE016792) ribosomal protein L11 methyltransferase [Pseudomonas
           putida KT2440]
          Length = 330

 Score =  491 bits (1264), Expect = e-138
 Identities = 241/292 (82%), Positives = 256/292 (87%)

>gb|AAO70833.1| (AE016845) ribosomal protein L11 methyltransferase [Salmonella
           enterica subsp. enterica serovar Typhi Ty2]
          Length = 293

 Score =  347 bits (889), Expect = 6e-95
 Identities = 175/296 (59%), Positives = 215/296 (72%), Gaps = 7/296 (2%)
Structural Features:
pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
CD-Length = 295 residues, 100.0% aligned
Score =  389 bits (1000), Expect = 2e-109
Identities = 161/296 (54%), Positives = 202/296 (68%), Gaps = 6/296 (2%)

COG2264, PrmA, Ribosomal protein L11 methylase 
[Translation, ribosomal structure and biogenesis]
CD-Length = 300 residues,  99.7% aligned
Score =  344 bits (885), Expect = 5e-96
Identities = 153/299 (51%), Positives = 182/299 (60%), Gaps = 7/299 (2%)
Genomic Context:
Comment:
ReferenceID:5049
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22195
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35186
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2523_cdd.html
URL:
ReferenceID:35976
Author/Investigator(s): Vanet A, Plumbridge JA, Alix JH.
Title: Cotranscription of two genes necessary for ribosomal protein L11 methylation (prmA) and pantothenate transport (panF) in Escherichia coli K-12.
PubMed: 8226664
MedLine:
Source:
J Bacteriol. 1993 Nov;175(22):7178-88.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8226664
Homologs By Global Alignment
Gene ID:2523

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4208 PA4850_tr translation of PA4850 294 99.99 99.99 0 1534.0
124182 gb|AAG08235.1|AE004898_6 (AE004898) ribosomal protein L11 methyltransferase [Pseudomonas aeruginosa PAO1] 294 99.99 99.99 0 1534.0
124183 gb|AAO58291.1| (AE016873) ribosomal protein L11 methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] 294 81.97 88.43 2 1267.0
124184 gb|AAN70387.1|AE016680_7 (AE016792) ribosomal protein L11 methyltransferase [Pseudomonas putida KT2440] 332 72.59 77.10 40 1264.0
124197 gb|AAP95039.1| (AE017151) ribosomal protein L11 methyltransferase [Haemophilus ducreyi 35000HP] 298 58.72 73.82 9 891.0
GC ORFID: 45525How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4850Glimmer Score:
Start: 4979532Stop: 4980416
Length: 885
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4850 translation of PA4850Homolog Bit Score 595.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5771 (ORF: BLASTX 490.0), t_PA4850 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCTGGTTACAAGTTCGCCTGGCCATCACCCCGGAACAGGCCGAAACCTACGAAGACGCCCTGCTCGAA
GTCGGCGCCGTCTCCGTGACCTTCATGGACGCCGAAGACCAGCCgatcttCGAGCCGGACCTCGGCACCACC
CCGCTGTGGTCGCGCACCCACCTGCTGGCGCTGTTCGAAGCGGACACCGACGAGACCGCCCTGCTCGCCCAC
CTCGCCTTGCTTACCGGCGGCGACCTGCCCGAGCACCATGTCGAGGAAATCGCCGACCAGGATTGGGAACGC
AGCTGGATGGACAACTTCCAGCCGATGCGTTTCGGCCGCCGCCTGTGGATCGTGCCGAGCTGGCACGCCGCC
CCCGAGCCGGACGCGGTCAACCTGCTGCTCGATCCGGGCCTGGCCTTCGGCACCGGCACCCACCCGACCACC
GCGCTGTGCCTGGAATGGCTCGACGGCCAGGAACTGGCCGGCCGGCAGGTGCTCGACTTCGGTTGCGGCTCG
GGAATCCTCGCCATCGCCGCGCTGCTGCTCGGCGCCGAACGGGCGGTCGGCACCGACATCGATCCACAGGCC
CTGGAAGCCTCGCGCGACAATGCCTCGCGCAACGGTATCGAGCCCGCGCGGTTCCCGGTCTACCTGCCGGCG
GACCTGCCGCAGCGACAGGCCGACGTGCTGGTCGCCAATATCCTCGCCGGCCCGCTGGTTTCCCTCGCCCCG
CAACTGACCGGCCTGGTACGTCCCGGCGGCCTGCTGGCGCTGTCCGGCATCCTCGCCGAGCAGGCCGAGGAG
GTCCGCGCGGCCTACTCCGCACACTTCGATCTCGACCCGACCGCCGAGCGCGAAGGCTGGATCCGCATCAGC
GGCCGCCGCCGCGCCGATTGA