ViewGene

Locus Name:
GeneID:
Location:

GeneID:2522
TrivialName: PA14_13560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13560
PAO1 Ortholog Locus:PA3892
Sequence Length:909
Protein Length:302
Start: 1166581
Stop: 1167489
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07279.1|AE004806_6 (AE004806) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 302/302 (100%), Positives = 302/302 (100%)
Sequence:
ATGACCTTGAAATCCGTAATCAGCCTGCTGGCGACCCTGCTGATCCTGTTGGTCGCCGTATTCATCGGGCGG
ACCCTGTGGGTCAACTACATGGACACCCCCTGGACCCGCGACGGTCGCGTGCGCGCCGACGTGATCAATGTC
GCCGCCGACGTTTCCGGGATCGTCGTCGACGTCCCGGTGCGCGACAACCAGTTGGTGAAGAAAGGCGACCTG
CTGATGCAGATCGACCCCGACCACTACCGCATCGCGGTGAAGCAGGCCGAGTCGCTGGTCGCCTCGCGCAAG
GCGACCCTGGAGATGCGCCAGCTGAACGCCCGGCGGCGCGCGGAAATGGATGAGATGGTGGTCTCCCGCGAA
AGCCGCGACGACGCCCACAACACCGCCGCCGCGGCGATGGCCGACTACGAGCAGGCCAAGGCCCAGCTCGAC
GCCGCGCGCCTGAACCTGGAGCGCACCCGGGTGGTGGCGCAGGTCGACGGCTACGTCACCAACCTCAACGTG
CACCGTGGCGACTACGCGCGGGTCGGCGAGGCGAAGATGGCGGTGATCGACAAGAACTCCTACTGGGTCTAC
GGCTACTTCGAGGAAACCAAGCTGCCGTACATCCGCGAAGGCGACCCGGTGGACATGCAGCTGATGAGCGGC
GAACACCTCAAGGGCCACGTGGAAAGCATCGCCCGCGGTATCTACGACCGCGACAACCCGGAAAGCCGCGAG
CTGACCGCCGACGTCAACCCCACTTTCAACTGGGTGCGCCTGGCCCAGCGCGTGCCGGTGCGGGTACACATC
GACGAAGTGCCGGACGGCGTGCTGCTCTCGGCGGGGATCACCTGCACGGTGATCGTCAAGCCACAAGGGCGC
GACGACCAGGCCTCGGCGGCGCAGGCGCCGGGGCGGGCCGGTTGA
Translation:
MTLKSVISLLATLLILLVAVFIGRTLWVNYMDTPWTRDGRVRADVINVAADVSGIVVDVPVRDNQLVKKGDL
LMQIDPDHYRIAVKQAESLVASRKATLEMRQLNARRRAEMDEMVVSRESRDDAHNTAAAAMADYEQAKAQLD
AARLNLERTRVVAQVDGYVTNLNVHRGDYARVGEAKMAVIDKNSYWVYGYFEETKLPYIREGDPVDMQLMSG
EHLKGHVESIARGIYDRDNPESRELTADVNPTFNWVRLAQRVPVRVHIDEVPDGVLLSAGITCTVIVKPQGR
DDQASAAQAPGRAG*
AnnotationID:2530GeneID:2522
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 19:07:34
Gene Name:
Confidence Code:3
GeneProduct:putative fusaric acid resistance protein
Cell Localization:()
Synonyms:PA3892
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:putative membrane fusion protein
Functional Category Confidence Code:5
COGs:COG1566,COG0845
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54747.1| (AE016860) fusaric acid resistance protein, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 286

 Score =  461 bits (1185), Expect = e-129
 Identities = 220/283 (77%), Positives = 259/283 (91%)

>gb|AAN33940.1|AE014571_1 (AE014571) HlyD family secretion protein [Brucella suis 1330]
          Length = 288

 Score =  243 bits (621), Expect = 8e-64
 Identities = 125/273 (45%), Positives = 181/273 (66%), Gaps = 1/273 (0%)
Structural Features:
COG1566, EmrA, Multidrug resistance efflux pump 
[Defense mechanisms]
CD-Length = 352 residues,  96.0% aligned
Score =  247 bits (633), Expect = 9e-67
Identities = 121/340 (35%), Positives = 163/340 (47%), Gaps = 50/340 (14%)

COG0845, AcrA, Membrane-fusion protein 
[Cell envelope biogenesis, outer membrane]
CD-Length = 372 residues,  65.6% aligned
Score = 68.6 bits (166), Expect = 8e-13
Genomic Context:
Comment:
ReferenceID:5047
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22193
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31674
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2252_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2522

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4204 PA3892_tr translation of PA3892 302 99.99 99.99 0 1534.0
124144 gb|AAG07279.1|AE004806_6 (AE004806) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 302 99.99 99.99 0 1534.0
124145 gb|AAO54747.1| (AE016860) fusaric acid resistance protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 303 72.93 85.80 18 1181.0
124146 gb|AAN66890.1|AE016317_7 (AE016778) fusaric acid resistance protein, putative [Pseudomonas putida KT2440] 303 68.97 83.82 18 1129.0
124147 gb|AAN66777.1|AE016306_3 (AE016778) membrane fusion protein, putative [Pseudomonas putida KT2440] 308 45.12 64.61 25 686.0
GC ORFID: 45524How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3892Glimmer Score:
Start: 3787357Stop: 3786449
Length: 909
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3892 translation of PA3892Homolog Bit Score 595.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4368 (ORF: BLASTX 461.0), t_PA3304 (ORF: BLASTX 255.0), t_PA2430 (ORF: BLASTX 234.0), t_PA1231 (ORF: BLASTX 224.0), psyr_15may02_Scaffold9_revised_gene8201 (ORF: BLASTX 214.0), t_PA3892 (ORF: GLIMMER)
GC ORF Sequence
ATGACCTTGAAATCCGTAATCAGCCTGCTGGCGACCCTGCTGATCCTGTTGGTCGCCGTATTCATCGGGCGG
ACCCTGTGGGTCAACTACATGGACACCCCCTGGACCCGCGACGGTCGCGTGCGCGCCGACGTGATCAATGTC
GCCGCCGACGTTTCCGGGATCGTCGTCGACGTCCCGGTGCGCGACAACCAGTTGGTGAAGAAAGGCGACCTG
CTGATGCAGATCGACCCCGACCACTACCGCATCGCGGTGAAGCAGGCCGAGTCGCTGGTCGCCTCGCGCAAG
GCGACCCTGGAGATGCGCCAGCTGAACGCCCGGCGGCGCGCGGAAATGGATGAGATGGTGGTCTCCCGCGAA
AGCCGCGACGACGCCCACAACACCGCCGCCGCGGCGATGGCCGACTACGAGCAGGCCAAGGCCCAGCTCGAC
GCCGCGCGCCTGAACCTGGAGCGCACCCGGGTGGTGGCGCAGGTCGACGGCTACGTCACCAACCTCAACGTG
CACCGTGGCGACTACGCGCGGGTCGGCGAGGCGAAGATGGCGGTGATCGACAAGAACTCCTACTGGGTCTAC
GGCTACTTCGAGGAAACCAAGCTGCCGTACATCCGCGAAGGCGACCCGGTGGACATGCAGCTGATGAGCGGC
GAACACCTCAAGGGCCACGTGGAAAGCATCGCCCGCGGTATCTACGACCGCGACAACCCGGAAAGCCGCGAG
CTGACCGCCGACGTCAACCCCACTTTCAACTGGGTGCGCCTGGCCCAGCGCGTGCCGGTGCGGGTACACATC
GACGAAGTGCCGGACGGCGTGCTGCTCTCGGCGGGGATCACCTGCACGGTGATCGTCAAGCCACAAGGGCGC
GACGACCAGGCCTCGGCGGCGCAGGCGCCGGGGCGGGCCGGTTGA