ViewGene
Locus Name:
GeneID:
Location:

GeneID:2521
TrivialName: PA14_14280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14280
PAO1 Ortholog Locus:PA3845
Sequence Length:897
Protein Length:298
Start: 1219243
Stop: 1218347
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07232.1|AE004802_1 (AE004802) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 297/298 (99%), Positives = 298/298 (100%)
Sequence:
ATGAGCGACCTCCCTCCCCTCACCGCGCTGCGCAGCTTCGAAGCGGTCGCCCGGCTCGGCAGCATCAGCCAG
GCCGCCAGCGAGCTGCACGTCACCCACTCGGCGATCAGCCAGCAGATCAAGCTGCTGGAAAACCTCCTCGGC
CTGGCCCTGTTCGTCCGCGAGGGGCGCGGCCTGCGCCTGAGCGAGAACGGCCGGTTCTACGCCCTGCAGGTA
CGCGCCTCGCTGGGCGAGATCGCCGACGCCACGCGGGTGGTGCGGGCGCGTCCGCGGGAGGGCGAGCTGGTG
GTCACGGTGATGCCGTCCTTCGGCCTGAACTGGCTGCTGCCTCGCCTGCCGCGCTTTCGCGAGCGCCATCCG
CACTGTCGCGTGCGGCTGGTGGCCAGTCTCGACGTGCAGAACCTGCGCCAGGGCCTGGCCGACCTCGGCGTA
CGCATCGGCAAGGGCGACTGGGAAGGGGTCGGTCGGGAACGCCTGTTCGACGACGAGTTGCTGATGGTCGCC
GCGCCCGACTTCAACGGCGGCCGCCTGCCGCGCACGCCGAGCGAGATCGTCGCCTGCCCTACCCTGCGCTCC
ACCGAATCCTGGGCGCTCTGGTGCCAGCGTGCCGGCGTGGCGGAACCGCAGCACGGACTGCTGATCAACGAC
TCGAACCTGCTGCTGGAAGCCGTGCGCCTGGGCCAGGGCATCGCCCTGGAGCGTCGCAGCCTGGTCGCCGGC
GCCCTCGCCGAGGGCCGCCTGGTGCAACTGGGCGACATCCGCGTGCCCTACCCCTATCCCTACTGGCTGGTC
TGGCCGCAGCGCGAGCCGCCGAGCGACCGCCACCAGGCCTTCGCCGACTGGCTGCGCGAGGAGGCCCGGCGC
TACCAGGCCGAGCAACCGCCGCTCAGCGAATGA
Translation:
MSDLPPLTALRSFEAVARLGSISQAASELHVTHSAISQQIKLLENLLGLALFVREGRGLRLSENGRFYALQV
RASLGEIADATRVVRARPREGELVVTVMPSFGLNWLLPRLPRFRERHPHCRVRLVASLDVQNLRQGLADLGV
RIGKGDWEGVGRERLFDDELLMVAAPDFNGGRLPRTPSEIVACPTLRSTESWALWCQRAGVAEPQHGLLIND
SNLLLEAVRLGQGIALERRSLVAGALAEGRLVQLGDIRVPYPYPYWLVWPQREPPSDRHQAFADWLREEARR
YQAEQPPLSE*
AnnotationID:2529GeneID:2521
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 22:10:23
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA3845
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD13853.1| (AL646058) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 320

 Score =  229 bits (584), Expect = 1e-59
 Identities = 128/291 (43%), Positives = 173/291 (59%), Gaps = 4/291 (1%)

>emb|CAE31662.1| (BX640440) putative LysR-family transcriptional regulator
           [Bordetella bronchiseptica]
          Length = 300

 Score =  166 bits (421), Expect = 1e-40
 Identities = 115/306 (37%), Positives = 161/306 (52%), Gaps = 18/306 (5%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score =  138 bits (349), Expect = 1e-33
Identities = 92/297 (30%), Positives = 130/297 (43%), Gaps = 9/297 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
The structure of this domain is known and is similar to the periplasmic binding proteins.
CD-Length = 209 residues, 100.0% aligned
Score =  110 bits (276), Expect = 4e-25
Identities = 71/210 (33%), Positives = 97/210 (46%), Gaps = 11/210 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5045




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22191




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31717




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2521_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2521
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4203
                           PA3845_tr
                           translation of PA3845
                           298
                           99.66
                           99.99
                           0
                           1535.0
     

     
     
124141
                           gb|AAG07232.1|AE004802_1
                           (AE004802) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           298
                           99.66
                           99.99
                           0
                           1535.0
     

     
     
124142
                           emb|CAD13853.1|
                           (AL646058) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           320
                           40.62
                           55.62
                           22
                           582.0
     

     
     
124143
                           emb|CAD18063.1|
                           (AL646081) PROBABLE TRANSCRIPTIONAL REGULATOR TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           313
                           40.57
                           58.46
                           15
                           573.0
     

     






      

          
GC ORFID: 45523How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3845Glimmer Score: 

          
Start: 3734695Stop: 3735591

          
Length: 897


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3845 translation of PA3845Homolog Bit Score 595.0

          
Other Homologs:  t_PA3845 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACCTCCCTCCCCTCACCGCGCTGCGCAGCTTCGAAGCGGTCGCCCGGCTCGGCAGCATCAGCCAG 
GCCGCCAGCGAGCTGCACGTCACCCACTCGGCGATCAGCCAGCAGATCAAGCTGCTGGAAAACCTCCTCGGC 
CTGGCCCTGTTCGTCCGCGAGGGGCGCGGCCTGCGCCTGAGCGAGAACGGCCGGTTCTACGCCCTGCAGGTA 
CGCGCCTCGCTGGGCGAGATCGCCGACGCCACGCGGGTGGTGCGGGCGCGTCCGCGGGAGGGCGAGCTGGTG 
GTCACGGTGATGCCGTCCTTCGGCCTGAACTGGCTGCTGCCTCGCCTGCCGCGCTTTCGCGAGCGCCATCCG 
CACTGTCGCGTGCGGCTGGTGGCCAGTCTCGACGTGCAGAACCTGCGCCAGGGCCTGGCCGACCTCGGCGTA 
CGCATCGGCAAGGGCGACTGGGAAGGGGTCGGTCGGGAACGCCTGTTCGACGACGAGTTGCTGATGGTCGCC 
GCGCCCGACTTCAACGGCGGCCGCCTGCCGCGCACGCCGAGCGAGATCGTCGCCTGCCCTACCCTGCGCTCC 
ACCGAATCCTGGGCGCTCTGGTGCCAGCGTGCCGGCGTGGCGGAACCGCAGCACGGACTGCTGATCAACGAC 
TCGAACCTGCTGCTGGAAGCCGTGCGCCTGGGCCAGGGCATCGCCCTGGAGCGTCGCAGCCTGGTCGCCGGC 
GCCCTCGCCGAGGGCCGCCTGGTGCAACTGGGCGACATCCGCGTGCCCTACCCCTATCCCTACTGGCTGGTC 
TGGCCGCAGCGCGAGCCGCCGAGCGACCGCCACCAGGCCTTCGCCGACTGGCTGCGCGAGGAGGCCCGGCGC 
TACCAGGCCGAGCAACCGCCGCTCAGCGAATGA