ViewGene

Locus Name:
GeneID:
Location:

GeneID:2520
TrivialName: PA14_24220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24220
PAO1 Ortholog Locus:PA3088
Sequence Length:888
Protein Length:295
Start: 2101330
Stop: 2102217
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06476.1|AE004733_3 (AE004733) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 295/295 (100%), Positives = 295/295 (100%)
Sequence:
ATGGAACCCTTTCGCAATATCGGCATCATCGGCCGCCTCGGCAGCACCCAGGTGCTGGATACCATCCGCCGG
CTGAAGAAATTCCTGATCGATCGCCACCTGCATGTGATCCTCGAGGACACCATCGCCGAAGTCCTGCCCGGA
CACGGCCTGCAGACCTGCTCGCGGAAGATCATGGGCGAAATCTGCGACCTGGTGGTGGTGGTCGGCGGCGAT
GGCAGCATGCTCGGCGCGGCCCGCGCGCTGGCCCGGCACAAGGTGCCGGTGCTGGGGATCAACCGCGGTAGC
CTGGGCTTCCTCACCGACATCCGCCCGGATGAACTGGAGGCCAAGGTCGGCGAGGTGCTGGACGGCCAGTAC
ATCGTCGAGAGCCGCTTCCTCCTCGATGCCCAGGTGCGTCGCGGTATCGACTCGATGGGGCAGGGCGATGCG
CTCAACGACGTGGTCCTGCACCCGGGCAAGTCGACCCGGATGATCGAGTTCGAGCTGTATATCGACGGCCAG
TTCGTCTGCAGCCAGAAGGCCGACGGCCTGATCGTCGCCACGCCCACCGGTTCCACCGCCTACGCGCTGTCC
GCCGGTGGTCCGATCATGCATCCGAAGCTGGATGCCATCGTCATCGTGCCGATGTACCCGCACATGCTTTCC
AGCCGCCCGATCGTGGTGGACGGCAACAGCGAGCTGAAGATCGTCGTGTCGCCGAACATGCAGATCTACCCG
CAGGTCTCCTGCGACGGGCAGAACCATTTCACCTGCGCCCCCGGCGATACCGTGACGATCAGCAAGAAGCCG
CAGAAGCTGCGCCTGATCCACCCCATCGACCACAACTACTACGAGATCTGCCGGACCAAGCTCGGCTGGGGC
AGCCGCCTGGGCGGAGGCGACTGA
Translation:
MEPFRNIGIIGRLGSTQVLDTIRRLKKFLIDRHLHVILEDTIAEVLPGHGLQTCSRKIMGEICDLVVVVGGD
GSMLGAARALARHKVPVLGINRGSLGFLTDIRPDELEAKVGEVLDGQYIVESRFLLDAQVRRGIDSMGQGDA
LNDVVLHPGKSTRMIEFELYIDGQFVCSQKADGLIVATPTGSTAYALSAGGPIMHPKLDAIVIVPMYPHMLS
SRPIVVDGNSELKIVVSPNMQIYPQVSCDGQNHFTCAPGDTVTISKKPQKLRLIHPIDHNYYEICRTKLGWG
SRLGGGD*
AnnotationID:2528GeneID:2520
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 13:01:43
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3088
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0061,pfam01513,KOG2178,KOG4180,COG3199, COG1597
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
sugar kinase
Genomic Context:
Comment:
ReferenceID:5043
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22189
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2520

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4202 PA3088_tr translation of PA3088 295 99.99 99.99 0 1534.0
124103 gb|AAG06476.1|AE004733_3 (AE004733) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 295 99.99 99.99 0 1534.0
124105 gb|AAO57262.1| (AE016869) inorganic polyphosphate/ATP-NAD kinase [Pseudomonas syringae pv. tomato str. DC3000] 296 86.82 94.25 1 1379.0
124104 gb|AAN67626.1|AE016392_7 (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440] 315 81.90 89.20 20 1387.0
124112 emb|CAE15747.1| (BX571870) Probable inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase) [Photorhabdus luminescens subsp. laumondii TTO1] 296 49.32 65.20 5 705.0
GC ORFID: 45522How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3088Glimmer Score:
Start: 2852601Stop: 2851714
Length: 888
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3088 translation of PA3088Homolog Bit Score 595.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene719 (ORF: BLASTX 533.0), t_PA3088 (ORF: GLIMMER)
GC ORF Sequence
ATGGAACCCTTTCGCAATATCGGCATCATCGGCCGCCTCGGCAGCACCCAGGTGCTGGATACCATCCGCCGG
CTGAAGAAATTCCTGATCGATCGCCACCTGCATGTGATCCTCGAGGACACCATCGCCGAAGTCCTGCCCGGA
CACGGCCTGCAGACCTGCTCGCGGAAGATCATGGGCGAAATCTGCGACCTGGTGGTGGTGGTCGGCGGCGAT
GGCAGCATGCTCGGCGCGGCCCGCGCGCTGGCCCGGCACAAGGTGCCGGTGCTGGGGATCAACCGCGGTAGC
CTGGGCTTCCTCACCGACATCCGCCCGGATGAACTGGAGGCCAAGGTCGGCGAGGTGCTGGACGGCCAGTAC
ATCGTCGAGAGCCGCTTCCTCCTCGATGCCCAGGTGCGTCGCGGTATCGACTCGATGGGGCAGGGCGATGCG
CTCAACGACGTGGTCCTGCACCCGGGCAAGTCGACCCGGATGATCGAGTTCGAGCTGTATATCGACGGCCAG
TTCGTCTGCAGCCAGAAGGCCGACGGCCTGATCGTCGCCACGCCCACCGGTTCCACCGCCTACGCGCTGTCC
GCCGGTGGTCCGATCATGCATCCGAAGCTGGATGCCATCGTCATCGTGCCGATGTACCCGCACATGCTTTCC
AGCCGCCCGATCGTGGTGGACGGCAACAGCGAGCTGAAGATCGTCGTGTCGCCGAACATGCAGATCTACCCG
CAGGTCTCCTGCGACGGGCAGAACCATTTCACCTGCGCCCCCGGCGATACCGTGACGATCAGCAAGAAGCCG
CAGAAGCTGCGCCTGATCCACCCCATCGACCACAACTACTACGAGATCTGCCGGACCAAGCTCGGCTGGGGC
AGCCGCCTGGGCGGAGGCGACTGA