ViewGene
Locus Name:
GeneID:
Location:

GeneID:2519
TrivialName: PA14_32540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32540
PAO1 Ortholog Locus:PA2481
Sequence Length:882
Protein Length:293
Start: 2826561
Stop: 2827442
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05869.1|AE004676_1 (AE004676) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 289/293 (98%), Positives = 289/293 (98%), Gaps = 2/293 (0%)
Sequence:
ATGAACATGCCGTCGATCCTTTCCCTGGTCGTCGCCGGCCTGCTGGTCGCTCCCGTCCACGCGGCAACGGCG
CCCTCGGAGCCGTTCCAGCCGCCGGCGGAAAGCAGCCTCCCGGACAACGCCTTCGGCGAAATGGTCCGCCAG
GGCCAGGCGTTGTTCGTGGAAACCCGGAAGAACGCGCCGCATCTGGTCGGCAACCAGCTCAACTGCGTCAAC
TGCCATCTCGACCAGGGCCGCCGGGCCAACTCCGCGCCGCAGTGGGCGGCCTACCCGGTCTATCCGGCGTTC
CGCGCCAAGAACAACAAGGTCAATACGTTCGCCGAGCGCCTGCAGGGCTGCTTCCAGTTCAGCATGAACGGC
AAGGTGCCGGCGGCCGACAGCCCGGAGATCAAGGCCCTGACCGTCTACGCCTATTGGCTGGCGAGCCAGGCG
CCGACCGGGGTCAGCCTGCCCGGACGCGGCTATCCGGACGTGGCCCCGCCGGAAGGCGGCTACAGCATCGAG
CGCGGCGCCAAGGTCTATGCCGCGCAATGCGCGATCTGCCACGGCGCCGACAGCCAGGGCCAGATGGCTCTG
GGGCAGACGGTGTTCCCACCGCTGTGGGGCGCGCAGTCGTTCAACTGGGGCGCGGGCATGCACCGCATCAAC
ACCGCGGCTTCCTTCATCAAGTACAACATGCCGTTGGGCAAGCCCGGTACCCTCAGCGACCGCGACGCCTGG
GACGTCGCCGCCTTCATGAACAGCCACGAGCGCGAGCGCCCGCAGGACCCGCGCCTGGTGGACGGTTCCGTG
GAGAAGACGCGGCAGAAGTTCCATGCCAACGACGGCGTCAACCTGTACGGACAGAAGGTCAACGGCGTGCTG
CTGGGACAGGGAATCTGA
Translation:
MNMPSILSLVVAGLLVAPVHAATAPSEPFQPPAESSLPDNAFGEMVRQGQALFVETRKNAPHLVGNQLNCVN
CHLDQGRRANSAPQWAAYPVYPAFRAKNNKVNTFAERLQGCFQFSMNGKVPAADSPEIKALTVYAYWLASQA
PTGVSLPGRGYPDVAPPEGGYSIERGAKVYAAQCAICHGADSQGQMALGQTVFPPLWGAQSFNWGAGMHRIN
TAASFIKYNMPLGKPGTLSDRDAWDVAAFMNSHERERPQDPRLVDGSVEKTRQKFHANDGVNLYGQKVNGVL
LGQGI*
AnnotationID:2527GeneID:2519
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 18:06:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2481
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3258, Cytochrome c [Energy production and conversion]
Score (bits) = 366, E value = 2e-102.






   
Genomic Context:






   
Comment:


















    ReferenceID:5041




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22187




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2519
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4201
                           PA2481_tr
                           translation of PA2481
                           293
                           98.63
                           98.63
                           2
                           1537.0
     

     
     
124095
                           gb|AAG05869.1|AE004676_1
                           (AE004676) hypothetical protein PA2481 [Pseudomonas aeruginosa PAO1]
                           293
                           98.63
                           98.63
                           2
                           1537.0
     

     
     
124096
                           gb|AAN69416.1|AE016578_2
                           (AE016788) cytochrome c family protein [Pseudomonas putida KT2440]
                           308
                           63.96
                           76.62
                           19
                           1080.0
     

     
     
124097
                           emb|CAE41868.1|
                           (BX640415) putative cytochrome C [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           310
                           53.54
                           65.16
                           22
                           851.0
     

     
     
124098
                           emb|CAE33462.1|
                           (BX640446) putative cytochrome C [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           310
                           53.22
                           65.16
                           22
                           847.0
     

     






      

          
GC ORFID: 45521How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2481Glimmer Score: 

          
Start: 2127363Stop: 2126482

          
Length: 882


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2481 translation of PA2481Homolog Bit Score 595.0

          
Other Homologs:  t_PA2481 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACATGCCGTCGATCCTTTCCCTGGTCGTCGCCGGCCTGCTGGTCGCTCCCGTCCACGCGGCAACGGCG 
CCCTCGGAGCCGTTCCAGCCGCCGGCGGAAAGCAGCCTCCCGGACAACGCCTTCGGCGAAATGGTCCGCCAG 
GGCCAGGCGTTGTTCGTGGAAACCCGGAAGAACGCGCCGCATCTGGTCGGCAACCAGCTCAACTGCGTCAAC 
TGCCATCTCGACCAGGGCCGCCGGGCCAACTCCGCGCCGCAGTGGGCGGCCTACCCGGTCTATCCGGCGTTC 
CGCGCCAAGAACAACAAGGTCAATACGTTCGCCGAGCGCCTGCAGGGCTGCTTCCAGTTCAGCATGAACGGC 
AAGGTGCCGGCGGCCGACAGCCCGGAGATCAAGGCCCTGACCGTCTACGCCTATTGGCTGGCGAGCCAGGCG 
CCGACCGGGGTCAGCCTGCCCGGACGCGGCTATCCGGACGTGGCCCCGCCGGAAGGCGGCTACAGCATCGAG 
CGCGGCGCCAAGGTCTATGCCGCGCAATGCGCGATCTGCCACGGCGCCGACAGCCAGGGCCAGATGGCTCTG 
GGGCAGACGGTGTTCCCACCGCTGTGGGGCGCGCAGTCGTTCAACTGGGGCGCGGGCATGCACCGCATCAAC 
ACCGCGGCTTCCTTCATCAAGTACAACATGCCGTTGGGCAAGCCCGGTACCCTCAGCGACCGCGACGCCTGG 
GACGTCGCCGCCTTCATGAACAGCCACGAGCGCGAGCGCCCGCAGGACCCGCGCCTGGTGGACGGTTCCGTG 
GAGAAGACGCGGCAGAAGTTCCATGCCAACGACGGCGTCAACCTGTACGGACAGAAGGTCAACGGCGTGCTG 
CTGGGACAGGGAATCTGA