ViewGene
Locus Name:
GeneID:
Location:

GeneID:2517
TrivialName: PA14_11740
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 01:01:10
LocusName:PA14_11740
PAO1 Ortholog Locus:PA4027
Sequence Length:894
Protein Length:297
Start: 1017840
Stop: 1016947
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07414.1|AE004819_7 (AE004819) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 296/297 (99%), Positives = 297/297 (100%)
Sequence:
ATGGGTTCGCGCACCTGGCACTGGCCCGGCGTCCTGCTCGGCCTGCTCCTCGCCACGGCCGGCGCGCAGGCC
GACACCCTGCGCGTGGCGACCCTCGACTGGGCGCCCTACGTCGGCCCCGACCTGCCGGGCAAGGGCCTCGCC
AGCCGCATCCTCGACGAAGCCCTGGCCCTCGACGGGCACCGCGCCGAACTGGTGTTCCTGCCCTGGCAACGT
GCCCTGAAGGAAGCCGCCGAGGGGCGCTTCGACGCCCTCATGCCGGCCTACCTGTCGCCCGAGCGGCGCGAA
CTGTTCCACGCCACCATCCCCCTGCTCGACTCGCAACTGGGCTTCTTCCGCCAGCGCGAGCGCCTGCTGCCG
GTCAATCCCGCGCATCTGGAAAGCCTGCGTCCGTACCGCATCGGCGTGGTCCGCGGCTACGTCAACCGGGAG
GATTTCGACGCCGACCGCAGCCTGACCAAGGACGCGGTGACCAACGACTGGCAGAACCTCGAGAAGCTCCTG
CGCGGGCGTATCGACCTGGCCGTGGTCGATCGCTACACCGGCTACCACCTGCTGGCGCGCAACGTGCCGGCG
CTGAAGGATCGCCTGGTGTTCATCGAACCGCCGCTGGAGGTCAAGCCGCTCTATGTACTGGTGCCGAAAAGA
CACGCCCGCGGCGCCGCCCTTGCCGCCAGCCTCGACCGCAACCTGCGCCTGATGCGTCGCAGCGGCCGGCTG
GAACAACTGATCGCCGAAGCGCACCTCGAACGCAGCGGGCAGACCCGCACGCTGGCCGTCGATCCGTTAACC
GGCCAGGCCGACCAGCAGCGCAGCCCCGGCCAGGAGCAGGACCAGGGCCAGCACGCCCCGTTGCAACCGGCG
TGGCGCAAAGACCCGCTGGGGATGCGCTAG
Translation:
MGSRTWHWPGVLLGLLLATAGAQADTLRVATLDWAPYVGPDLPGKGLASRILDEALALDGHRAELVFLPWQR
ALKEAAEGRFDALMPAYLSPERRELFHATIPLLDSQLGFFRQRERLLPVNPAHLESLRPYRIGVVRGYVNRE
DFDADRSLTKDAVTNDWQNLEKLLRGRIDLAVVDRYTGYHLLARNVPALKDRLVFIEPPLEVKPLYVLVPKR
HARGAALAASLDRNLRLMRRSGRLEQLIAEAHLERSGQTRTLAVDPLTGQADQQRSPGQEQDQGQHAPLQPA
WRKDPLGMR*
AnnotationID:2525GeneID:2517
AnnotatorUID: diggins
Modification Date/Time: 2006-02-06 21:09:07
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4027
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00497
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58438.1| (AE016874) amino acid ABC transporter, periplasmic amino
           acid-binding protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 251

 Score =  113 bits (283), Expect = 1e-24
 Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 3/235 (1%)







 
Structural Features:
gnl|CDD|25526 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3
Length = 224
Score = 64.9 bits (158), Expect = 2e-11
Identities = 50/227 (22%), Positives = 88/227 (38%), Gaps = 14/227 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5037




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22183




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2517
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4199
                           PA4027_tr
                           translation of PA4027
                           297
                           99.66
                           99.99
                           0
                           1537.0
     

     
     
124080
                           gb|AAG07414.1|AE004819_7
                           (AE004819) hypothetical protein PA4027 [Pseudomonas aeruginosa PAO1]
                           297
                           99.66
                           99.99
                           0
                           1537.0
     

     






      

          
GC ORFID: 45519How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4027Glimmer Score: 

          
Start: 3936097Stop: 3936990

          
Length: 894


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4027 translation of PA4027Homolog Bit Score 596.0

          
Other Homologs:  t_PA4027 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTTCGCGCACCTGGCACTGGCCCGGCGTCCTGCTCGGCCTGCTCCTCGCCACGGCCGGCGCGCAGGCC 
GACACCCTGCGCGTGGCGACCCTCGACTGGGCGCCCTACGTCGGCCCCGACCTGCCGGGCAAGGGCCTCGCC 
AGCCGCATCCTCGACGAAGCCCTGGCCCTCGACGGGCACCGCGCCGAACTGGTGTTCCTGCCCTGGCAACGT 
GCCCTGAAGGAAGCCGCCGAGGGGCGCTTCGACGCCCTCATGCCGGCCTACCTGTCGCCCGAGCGGCGCGAA 
CTGTTCCACGCCACCATCCCCCTGCTCGACTCGCAACTGGGCTTCTTCCGCCAGCGCGAGCGCCTGCTGCCG 
GTCAATCCCGCGCATCTGGAAAGCCTGCGTCCGTACCGCATCGGCGTGGTCCGCGGCTACGTCAACCGGGAG 
GATTTCGACGCCGACCGCAGCCTGACCAAGGACGCGGTGACCAACGACTGGCAGAACCTCGAGAAGCTCCTG 
CGCGGGCGTATCGACCTGGCCGTGGTCGATCGCTACACCGGCTACCACCTGCTGGCGCGCAACGTGCCGGCG 
CTGAAGGATCGCCTGGTGTTCATCGAACCGCCGCTGGAGGTCAAGCCGCTCTATGTACTGGTGCCGAAAAGA 
CACGCCCGCGGCGCCGCCCTTGCCGCCAGCCTCGACCGCAACCTGCGCCTGATGCGTCGCAGCGGCCGGCTG 
GAACAACTGATCGCCGAAGCGCACCTCGAACGCAGCGGGCAGACCCGCACGCTGGCCGTCGATCCGTTAACC 
GGCCAGGCCGACCAGCAGCGCAGCCCCGGCCAGGAGCAGGACCAGGGCCAGCACGCCCCGTTGCAACCGGCG 
TGGCGCAAAGACCCGCTGGGGATGCGCTAG