ViewGene
Locus Name:
GeneID:
Location:

GeneID:2516
TrivialName: PA14_11620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11620
PAO1 Ortholog Locus:PA4037
Sequence Length:927
Protein Length:308
Start: 1006974
Stop: 1006048
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07424.1|AE004820_9 (AE004820) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 305/308 (99%), Positives = 306/308 (99%)
Sequence:
ATGATCGACATAGACAGACTGAGCAAACGCTTTTCCGGCCGGACGGTGGTAAACGACTTGAGCTTCCGGATC
GACCGGGGAGAGATCGTCGGTCTCCTCGGCCCAAACGGAGCGGGCAAGTCGACCACCCTGAAGATGCTTTCC
GGCTTCCTCGCGCCGAGCGCCGGCAGCATACGCATCTTCGGCTTCGACATGCAGGACAAGGCGCGCCAGGCG
CAGAAGCTGATCGGCTACCTGCCGGAGAACGCTCCCAGCTACGGAGAAATGACGGTCGAGGGCTTTCTCGCC
TTCGTCGCGTCCATCCGCGACTACAGCGGACGGGAAAAACGTCGGCGCATCGACAGCGCCATGGACTGCATG
GAGCTGCGGGATGAGCGCAGGAGCATCATCGAAACCCTGTCCAAGGGCTTCAAGCGTCGCGTCGCGCTGGCC
CAGGCGATCCTCCACGATCCCGAGCTGCTCCTGCTCGACGAGCCCACCGACGGCCTCGACCCGAATCAGAAG
CACCAGGTCCGGCAACTGGTGAAGAACCTCTCGGAAAGCAAGATCGTGGTGATTTCCACGCACATCCTCGAA
GAAGTCTCGTTCATGTGCAGCCGCGCCCTGGTGATCAACGGCGGCCGCCTGCTGGCCGACAACACCCCGGGC
GAACTCAGGACCCGCAGCCGCTACCACCATGCCGTCAGCCTCAGCATCGAAGCACCGGTAGACCCGCTGGCC
ATCGCCATGCTCCCCGGCGTCGCCGGTATAGAAGGATGCCCCGACCGGGCCGGCACCCTGACCATCCTGGCC
CGCCCCGGCGCGCAGATCCTTCCCGCGCTCAACCGCCTGATCCACGGCAGCGGCTGGCGGGTATCCGGGGTG
CGTACCGAACACGGCCAACTGGAAGAAGTGTTCCGCCAACTGACCCGAGAAACCCCCGCATGA
Translation:
MIDIDRLSKRFSGRTVVNDLSFRIDRGEIVGLLGPNGAGKSTTLKMLSGFLAPSAGSIRIFGFDMQDKARQA
QKLIGYLPENAPSYGEMTVEGFLAFVASIRDYSGREKRRRIDSAMDCMELRDERRSIIETLSKGFKRRVALA
QAILHDPELLLLDEPTDGLDPNQKHQVRQLVKNLSESKIVVISTHILEEVSFMCSRALVINGGRLLADNTPG
ELRTRSRYHHAVSLSIEAPVDPLAIAMLPGVAGIEGCPDRAGTLTILARPGAQILPALNRLIHGSGWRVSGV
RTEHGQLEEVFRQLTRETPA*
AnnotationID:2524GeneID:2516
AnnotatorUID: urbach
Modification Date/Time: 2004-10-05 16:04:10
Gene Name:
Confidence Code:3
GeneProduct:probable ABC transporter
Cell Localization:()
Synonyms:PA4037
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1131,COG4152,COG4555
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|10851 COG1131, CcmA, ABC-type multidrug transport system, ATPase component
[Defense mechanisms]
Length = 293
Score =  261 bits (668), Expect = 2e-70
Identities = 103/308 (33%), Positives = 173/308 (56%), Gaps = 21/308 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5035




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22181




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2516
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4197
                           PA4037_tr
                           translation of PA4037
                           308
                           99.02
                           99.35
                           0
                           1537.0
     

     
     
124068
                           gb|AAG07424.1|AE004820_9
                           (AE004820) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           308
                           99.02
                           99.35
                           0
                           1537.0
     

     
     
4198
                           PA3672_tr
                           translation of PA3672
                           308
                           61.68
                           78.24
                           1
                           982.0
     

     
     
124069
                           gb|AAG07060.1|AE004786_12
                           (AE004786) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           308
                           61.68
                           78.24
                           1
                           982.0
     

     
     
124071
                           dbj|BAC09025.1|
                           (AP005374) ABC transporter ATP-binding protein [Thermosynechococcus elongatus BP-1]
                           323
                           38.69
                           58.20
                           15
                           568.0
     

     






      

          
GC ORFID: 45518How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4037Glimmer Score: 

          
Start: 3946963Stop: 3947889

          
Length: 927


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4037 translation of PA4037Homolog Bit Score 596.0

          
Other Homologs:  t_PA3672 (ORF: BLASTX 382.0), t_PA4037 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGACATAGACAGACTGAGCAAACGCTTTTCCGGCCGGACGGTGGTAAACGACTTGAGCTTCCGGATC 
GACCGGGGAGAGATCGTCGGTCTCCTCGGCCCAAACGGAGCGGGCAAGTCGACCACCCTGAAGATGCTTTCC 
GGCTTCCTCGCGCCGAGCGCCGGCAGCATACGCATCTTCGGCTTCGACATGCAGGACAAGGCGCGCCAGGCG 
CAGAAGCTGATCGGCTACCTGCCGGAGAACGCTCCCAGCTACGGAGAAATGACGGTCGAGGGCTTTCTCGCC 
TTCGTCGCGTCCATCCGCGACTACAGCGGACGGGAAAAACGTCGGCGCATCGACAGCGCCATGGACTGCATG 
GAGCTGCGGGATGAGCGCAGGAGCATCATCGAAACCCTGTCCAAGGGCTTCAAGCGTCGCGTCGCGCTGGCC 
CAGGCGATCCTCCACGATCCCGAGCTGCTCCTGCTCGACGAGCCCACCGACGGCCTCGACCCGAATCAGAAG 
CACCAGGTCCGGCAACTGGTGAAGAACCTCTCGGAAAGCAAGATCGTGGTGATTTCCACGCACATCCTCGAA 
GAAGTCTCGTTCATGTGCAGCCGCGCCCTGGTGATCAACGGCGGCCGCCTGCTGGCCGACAACACCCCGGGC 
GAACTCAGGACCCGCAGCCGCTACCACCATGCCGTCAGCCTCAGCATCGAAGCACCGGTAGACCCGCTGGCC 
ATCGCCATGCTCCCCGGCGTCGCCGGTATAGAAGGATGCCCCGACCGGGCCGGCACCCTGACCATCCTGGCC 
CGCCCCGGCGCGCAGATCCTTCCCGCGCTCAACCGCCTGATCCACGGCAGCGGCTGGCGGGTATCCGGGGTG 
CGTACCGAACACGGCCAACTGGAAGAAGTGTTCCGCCAACTGACCCGAGAAACCCCCGCATGA