ViewGene
Locus Name:
GeneID:
Location:

GeneID:2515
TrivialName: PA14_17660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17660
PAO1 Ortholog Locus:PA3605
Sequence Length:927
Protein Length:308
Start: 1518835
Stop: 1517909
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06993.1|AE004781_1 (AE004781) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 308/308 (100%), Positives = 308/308 (100%)
Sequence:
GTGGCGGACCCTCCCCGCCCCGTCGAGCGAGCCATGCGAAGCCAAGCCCTGCGTGCCGATGTCCTGATGCTG
ATCACCGCCATGATCTGGGGGGTGTCGTTCGTCGCCCAGCGCCTGGGGATGGACGCCATCGGGCCGTTCCTC
TATACCGGCCTGCGCTTCGTCCTCGGTGCCCTGGTGCTGGTGCCACTGCTGATGCTGCGCTCGCGACGCGAC
GGCGCGCAACCCTTCAATCGCGGACAGTTGCTCGCCGGTGTGATCCTCGGCGTCGCCCTGACCACCGGGATC
AACCTGCAGCAGGTCGGCCTGCTGTTCACCAGCGTGACCAACTCCGGCTTCATCACCGGGCTCTACGTGATC
GTCGTGCCGTTGCTCGGCCTGCTGTTCGGCCAGCGCACCGGCGCGGGCACCTGGCTGGGGGCGTCGCTGGCG
GTGCTCGGCATGGCCCTGCTGAGCATCGGCCCAGGCTTCCAGGTCGCCTCCGGCGACTGGCTGCAACTGGCC
GGCGCGGTGGTCTGGGGCGCGCACGTCCTGCTGGTAGGCCTGTTCGCCAGCCGCTACGACCCGATCCGCCTG
GCCTTCCTGCAGTTCGCCACCTGCGCGGCGGTCAGCCTGCTGCTGGCACTGGTCTTCGAGGAAATCCACTGG
GACGCCATCGTCCAGGCCGGTCCCGCCCTGCTATACGGCGGCCTGCTCGGCGTCGGCACCGGCTTCACCCTG
CAGGTGGTGGCGCAGAAGCACGCCATCGCTTCCCATGCGGCGATCATCCTGTCCCTGGAAGCGGTGTTCGCC
GCCATCGCCGGCGCCCTGTTCCTCGCCGAGACCCTGCACCTGCGCGGCTATTTCGGTTGCGCGCTGATGCTG
GCGGGCATGCTGGTGGCGCAGTTGTGGCCGCGCAAGCTCGCCGCCGAAGCGCGCCCGGCCTGA
Translation:
MADPPRPVERAMRSQALRADVLMLITAMIWGVSFVAQRLGMDAIGPFLYTGLRFVLGALVLVPLLMLRSRRD
GAQPFNRGQLLAGVILGVALTTGINLQQVGLLFTSVTNSGFITGLYVIVVPLLGLLFGQRTGAGTWLGASLA
VLGMALLSIGPGFQVASGDWLQLAGAVVWGAHVLLVGLFASRYDPIRLAFLQFATCAAVSLLLALVFEEIHW
DAIVQAGPALLYGGLLGVGTGFTLQVVAQKHAIASHAAIILSLEAVFAAIAGALFLAETLHLRGYFGCALML
AGMLVAQLWPRKLAAEARPA*
AnnotationID:2523GeneID:2515
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 13:01:19
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane protein
Cell Localization:()
Synonyms:PA3605
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK78061.1|AE007520_7 (AE007520) Predicted permease [Clostridium acetobutylicum]
          Length = 303

 Score =  253 bits (647), Expect = 8e-67
 Identities = 119/287 (41%), Positives = 193/287 (67%), Gaps = 2/287 (0%)

>gb|AAL85313.1|AF472590_1 (AF472590) hypothetical transmembrane protein [Sinorhizobium
           meliloti]
          Length = 300

 Score =  214 bits (545), Expect = 5e-55
 Identities = 128/296 (43%), Positives = 173/296 (58%), Gaps = 8/296 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14613




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22179




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31936




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2523_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2515
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4196
                           PA3605_tr
                           translation of PA3605
                           308
                           99.99
                           99.99
                           0
                           1536.0
     

     
     
124064
                           gb|AAG06993.1|AE004781_1
                           (AE004781) hypothetical protein PA3605 [Pseudomonas aeruginosa PAO1]
                           308
                           99.67
                           99.99
                           0
                           1533.0
     

     
     
124066
                           gb|AAL85313.1|AF472590_1
                           (AF472590) hypothetical transmembrane protein [Sinorhizobium meliloti]
                           315
                           40.63
                           55.23
                           22
                           549.0
     

     
     
124067
                           emb|CAC46908.1|
                           (AL591790) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium meliloti]
                           315
                           40.63
                           55.23
                           22
                           549.0
     

     
     
124065
                           gb|AAK78061.1|AE007520_7
                           (AE007520) Predicted permease [Clostridium acetobutylicum]
                           317
                           38.17
                           62.14
                           23
                           646.0
     

     






      

          
GC ORFID: 45517How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3605Glimmer Score: 

          
Start: 3435102Stop: 3436028

          
Length: 927


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3605 translation of PA3605Homolog Bit Score 596.0

          
Other Homologs:  t_PA3605 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCGGACCCTCCCCGCCCCGTCGAGCGAGCCATGCGAAGCCAAGCCCTGCGTGCCGATGTCCTGATGCTG 
ATCACCGCCATGATCTGGGGGGTGTCGTTCGTCGCCCAGCGCCTGGGGATGGACGCCATCGGGCCGTTCCTC 
TATACCGGCCTGCGCTTCGTCCTCGGTGCCCTGGTGCTGGTGCCACTGCTGATGCTGCGCTCGCGACGCGAC 
GGCGCGCAACCCTTCAATCGCGGACAGTTGCTCGCCGGTGTGATCCTCGGCGTCGCCCTGACCACCGGGATC 
AACCTGCAGCAGGTCGGCCTGCTGTTCACCAGCGTGACCAACTCCGGCTTCATCACCGGGCTCTACGTGATC 
GTCGTGCCGTTGCTCGGCCTGCTGTTCGGCCAGCGCACCGGCGCGGGCACCTGGCTGGGGGCGTCGCTGGCG 
GTGCTCGGCATGGCCCTGCTGAGCATCGGCCCAGGCTTCCAGGTCGCCTCCGGCGACTGGCTGCAACTGGCC 
GGCGCGGTGGTCTGGGGCGCGCACGTCCTGCTGGTAGGCCTGTTCGCCAGCCGCTACGACCCGATCCGCCTG 
GCCTTCCTGCAGTTCGCCACCTGCGCGGCGGTCAGCCTGCTGCTGGCACTGGTCTTCGAGGAAATCCACTGG 
GACGCCATCGTCCAGGCCGGTCCCGCCCTGCTATACGGCGGCCTGCTCGGCGTCGGCACCGGCTTCACCCTG 
CAGGTGGTGGCGCAGAAGCACGCCATCGCTTCCCATGCGGCGATCATCCTGTCCCTGGAAGCGGTGTTCGCC 
GCCATCGCCGGCGCCCTGTTCCTCGCCGAGACCCTGCACCTGCGCGGCTATTTCGGTTGCGCGCTGATGCTG 
GCGGGCATGCTGGTGGCGCAGTTGTGGCCGCGCAAGCTCGCCGCCGAAGCGCGCCCGGCCTGA