ViewGene
Locus Name:
GeneID:
Location:

GeneID:2514
TrivialName: PA14_20750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20750
PAO1 Ortholog Locus:PA3349
Sequence Length:933
Protein Length:310
Start: 1785406
Stop: 1786338
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06737.1|AE004757_6 (AE004757) probable chemotaxis protein [Pseudomonas aeruginosa PAO1]
Identities = 308/310 (99%), Positives = 309/310 (99%)
Sequence:
ATGGCCGGTGTTTTGGATTCAGTCAACCAGCGCACGCAGTTGGTCGGACAGAACCGTCTGGAGCTGCTTCTG
TTCCGTCTGGACGGTAACCAGCTCTACGGCATCAACGTGTTCAAGGTGAAAGAGGTGTTGCAATGCCCGCGC
CTGACGGTGATGCCCAAGTCCAGCCCGGTGGTGCGCGGGGTGGCGAACATCCGCGGAGGCACCATTCCGATC
CTCGACCTGGCGCTGGCCACCGGCCGCCGCGGGTTGCAGGACCTGACCAACAGCTTCGCGATCATCACCGAG
TACAACACCAAGGTGCAGGGCTTCCTGGTGCGCTCGGTGGAGCGCATCGTCAACATGAACTGGGAAGAGATC
CATCCGCCACCCAAGGGCGCCGGCCGCGAGCATTACCTGACCGCGGTGACCCGGGTGGACAAGCAGTTGGTG
GAAATCATCGACGTGGAAAAAGTGCTCGCGGAGGTCGCACCGACGTCCGAGGAAGTGTCCCACGGAGTGGTG
GACGCCGAGACCCAGAGCCGCGCGGTGACCAAGCGGGTGCTGGTGGTGGACGATTCGTCGGTGGCGCGCAAG
CAGGTGACCCGTTGCCTGGAGGCGGTCGGCGTGGAAATGACCGCGCTCAACGACGGGCGCCAGGCCCTGGAG
TACCTGCAGAACATGCTCGCCGAGGGACGGCGTCCGGAAGACGAGCTGCTGATGCTGATCTCCGACATCGAA
ATGCCGGAAATGGACGGTTATACCCTGACGGCGGAAATCCGTAGCGATCCCCGCCTGCAGAAACTGCACATT
CTCTTGCATACTTCGTTGTCCGGGGTCTTCAACCAGGCGATGGTGAAGAAGGTCGGTGCGGACGACTTCCTC
GCCAAGTTCCGTCCGGACGATCTGGCGGCGCGGGTGGTGGAGCGGATCAAGGCGGTGGACGCGGGCTGA
Translation:
MAGVLDSVNQRTQLVGQNRLELLLFRLDGNQLYGINVFKVKEVLQCPRLTVMPKSSPVVRGVANIRGGTIPI
LDLALATGRRGLQDLTNSFAIITEYNTKVQGFLVRSVERIVNMNWEEIHPPPKGAGREHYLTAVTRVDKQLV
EIIDVEKVLAEVAPTSEEVSHGVVDAETQSRAVTKRVLVVDDSSVARKQVTRCLEAVGVEMTALNDGRQALE
YLQNMLAEGRRPEDELLMLISDIEMPEMDGYTLTAEIRSDPRLQKLHILLHTSLSGVFNQAMVKKVGADDFL
AKFRPDDLAARVVERIKAVDAG*
AnnotationID:2522GeneID:2514
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 11:11:08
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis signal transduction protein
Cell Localization:()
Synonyms:PA3349
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0835
Secondary Functional Category(ies):motility and attachment
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55445.1| (AE016862) chemotaxis protein CheV, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 308

 Score =  513 bits (1320), Expect = e-145
 Identities = 256/308 (83%), Positives = 281/308 (91%)

>gb|AAN56250.1|AE015762_7 (AE015762) chemotaxis protein CheV [Shewanella oneidensis MR-1]
          Length = 306

 Score =  367 bits (942), Expect = e-101
 Identities = 183/300 (61%), Positives = 234/300 (78%)

>gb|AAO08765.1|AE016797_220 (AE016797) CheY/CheV hybrid protein CheW [Vibrio vulnificus CMCP6]
          Length = 308

 Score =  354 bits (909), Expect = 3e-97
 Identities = 179/304 (58%), Positives = 230/304 (75%), Gaps = 6/304 (1%)








 
Structural Features:
COG0835, CheW, Chemotaxis signal transduction protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 165 residues, 100.0% aligned
Score =  136 bits (345), Expect = 2e-33
Identities = 62/166 (37%), Positives = 98/166 (59%), Gaps = 3/166 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5031




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22177




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32205




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2514_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2514
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4195
                           PA3349_tr
                           translation of PA3349
                           310
                           99.35
                           99.67
                           0
                           1536.0
     

     
     
124044
                           gb|AAG06737.1|AE004757_6
                           (AE004757) probable chemotaxis protein [Pseudomonas aeruginosa PAO1]
                           310
                           99.35
                           99.67
                           0
                           1536.0
     

     
     
124045
                           gb|AAO55445.1|
                           (AE016862) chemotaxis protein CheV, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           310
                           82.58
                           90.64
                           2
                           1320.0
     

     
     
124046
                           gb|AAN69971.1|AE016635_7
                           (AE016790) chemotaxis protein CheV [Pseudomonas putida KT2440]
                           311
                           80.38
                           89.38
                           3
                           1278.0
     

     
     
124047
                           gb|AAN08635.1|
                           (AY129558) CheV [Aeromonas hydrophila]
                           312
                           63.14
                           78.20
                           11
                           988.0
     

     






      

          
GC ORFID: 45516How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3349Glimmer Score: 

          
Start: 3168526Stop: 3167594

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3349 translation of PA3349Homolog Bit Score 596.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7885 (ORF: BLASTX 514.0), psyr_15may02_Scaffold9_revised_gene8038 (ORF: BLASTX 327.0), t_PA3349 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGGTGTTTTGGATTCAGTCAACCAGCGCACGCAGTTGGTCGGACAGAACCGTCTGGAGCTGCTTCTG 
TTCCGTCTGGACGGTAACCAGCTCTACGGCATCAACGTGTTCAAGGTGAAAGAGGTGTTGCAATGCCCGCGC 
CTGACGGTGATGCCCAAGTCCAGCCCGGTGGTGCGCGGGGTGGCGAACATCCGCGGAGGCACCATTCCGATC 
CTCGACCTGGCGCTGGCCACCGGCCGCCGCGGGTTGCAGGACCTGACCAACAGCTTCGCGATCATCACCGAG 
TACAACACCAAGGTGCAGGGCTTCCTGGTGCGCTCGGTGGAGCGCATCGTCAACATGAACTGGGAAGAGATC 
CATCCGCCACCCAAGGGCGCCGGCCGCGAGCATTACCTGACCGCGGTGACCCGGGTGGACAAGCAGTTGGTG 
GAAATCATCGACGTGGAAAAAGTGCTCGCGGAGGTCGCACCGACGTCCGAGGAAGTGTCCCACGGAGTGGTG 
GACGCCGAGACCCAGAGCCGCGCGGTGACCAAGCGGGTGCTGGTGGTGGACGATTCGTCGGTGGCGCGCAAG 
CAGGTGACCCGTTGCCTGGAGGCGGTCGGCGTGGAAATGACCGCGCTCAACGACGGGCGCCAGGCCCTGGAG 
TACCTGCAGAACATGCTCGCCGAGGGACGGCGTCCGGAAGACGAGCTGCTGATGCTGATCTCCGACATCGAA 
ATGCCGGAAATGGACGGTTATACCCTGACGGCGGAAATCCGTAGCGATCCCCGCCTGCAGAAACTGCACATT 
CTCTTGCATACTTCGTTGTCCGGGGTCTTCAACCAGGCGATGGTGAAGAAGGTCGGTGCGGACGACTTCCTC 
GCCAAGTTCCGTCCGGACGATCTGGCGGCGCGGGTGGTGGAGCGGATCAAGGCGGTGGACGCGGGCTGA