ViewGene
Locus Name:
GeneID:
Location:

GeneID:2513
TrivialName: PA14_22660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22660
PAO1 Ortholog Locus:PA3213
Sequence Length:939
Protein Length:312
Start: 1971554
Stop: 1970616
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06601.1|AE004744_16 (AE004744) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 312/312 (100%), Positives = 312/312 (100%)
Sequence:
ATGGAAACCCGAGCCCACCATGTGTTGATCGGCCTGTTCAGCGTGATCGTGATCGGCGCCGCCCTGCTCTTC
GGCCTGTGGCTGGCCAAGTCCGGCTCGGAGGGCAAGTTCAACTACTACGACATCGTCTTCAACGAAGCGGTC
AGCGGCCTTTCCCAGGGCAGCTCGGTGCAGTACAGCGGGATCAAGGTCGGCGACGTGGCCTTCCTCCGCCTC
GATCCGAAGGACCCGCGCAAGGTCTGGGCACGCATCCGCGTGGTGGCCAGCGCGCCGATCAAGCAGGACACC
ACCGCCAAGCTGGCGCTCACCGGGATCACCGGCACCTCGATCATCCAGCTCAGCAGCGGCACGCCCGCCAGC
CCGATGCTGGAGGGCAAGGACGGGAAGATCCCGGTGATCGTCGCCACGCCCTCGCCGCTGACCCAGTTGCTG
AGCAACGGCGAAGACCTGATGGGCAACATCAACCAGCTCATCGCGCGCTTCAGCAACCTGCTCTCCGAGGAA
AACACAGCGCGCATCAGCCGCACCCTCGACCATCTCGACCAGGCCACCGGCGCGCTCTCCGCCGAGCGCGAG
AACGTCAGCGCGGTGATGCAGCAGTTGGCCCAGGCGAGCAGGCAGGCCAACGCCGCGCTGGCCCAGGCCAGC
GAGTTGATGCGCAGCGCCAACGGCCTGCTCAACGAGCAAGGCAAGGGGATGCTGGAAAACGCCAACAAGACC
ATGGCTTCGCTGGAGCGCACCAGCGCCACCCTCGACCAGTTGATCAGCGAGAATCGCCACTCGCTGGACGGC
GGCATCCAGGGACTCGCCGAGCTGGGCCCGGCGGTCAGCGAACTGCGCGATACCCTGGCGGCACTGCGCGGA
ATCAGCCGGCGCCTGGAAGAGAACCCGGCGAACTACCTGCTGGGCCGGGAAAAAACCAAGGAGTTCACCCCA
TGA
Translation:
METRAHHVLIGLFSVIVIGAALLFGLWLAKSGSEGKFNYYDIVFNEAVSGLSQGSSVQYSGIKVGDVAFLRL
DPKDPRKVWARIRVVASAPIKQDTTAKLALTGITGTSIIQLSSGTPASPMLEGKDGKIPVIVATPSPLTQLL
SNGEDLMGNINQLIARFSNLLSEENTARISRTLDHLDQATGALSAERENVSAVMQQLAQASRQANAALAQAS
ELMRSANGLLNEQGKGMLENANKTMASLERTSATLDQLISENRHSLDGGIQGLAELGPAVSELRDTLAALRG
ISRRLEENPANYLLGREKTKEFTP*
AnnotationID:2521GeneID:2513
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 09:09:17
Gene Name:
Confidence Code:3
GeneProduct:ABC-type transporter, periplasmic component
Cell Localization:()
Synonyms:PA3213
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1463
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1463, Ttg2C, ABC-type transport system involved in resistance 
to organic solvents, periplasmic component 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 359 residues,  85.0% aligned
Score =  155 bits (392), Expect = 8e-39
Identities = 93/310 (30%), Positives = 141/310 (45%), Gaps = 11/310 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5029




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22175




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32332




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2513_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2513
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4194
                           PA3213_tr
                           translation of PA3213
                           312
                           99.99
                           99.99
                           0
                           1536.0
     

     
     
124039
                           gb|AAG06601.1|AE004744_16
                           (AE004744) hypothetical protein PA3213 [Pseudomonas aeruginosa PAO1]
                           312
                           99.99
                           99.99
                           0
                           1536.0
     

     
     
124040
                           gb|AAN65774.1|AE016203_7
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           312
                           54.48
                           75.00
                           0
                           897.0
     

     
     
124041
                           gb|AAM38415.1|
                           (AE012007) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           315
                           40.95
                           60.95
                           10
                           607.0
     

     
     
124042
                           gb|AAM39949.1|
                           (AE012161) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           315
                           40.63
                           60.95
                           10
                           604.0
     

     






      

          
GC ORFID: 45515How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3213Glimmer Score: 

          
Start: 2982377Stop: 2983315

          
Length: 939


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3213 translation of PA3213Homolog Bit Score 596.0

          
Other Homologs:  t_PA3213 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAACCCGAGCCCACCATGTGTTGATCGGCCTGTTCAGCGTGATCGTGATCGGCGCCGCCCTGCTCTTC 
GGCCTGTGGCTGGCCAAGTCCGGCTCGGAGGGCAAGTTCAACTACTACGACATCGTCTTCAACGAAGCGGTC 
AGCGGCCTTTCCCAGGGCAGCTCGGTGCAGTACAGCGGGATCAAGGTCGGCGACGTGGCCTTCCTCCGCCTC 
GATCCGAAGGACCCGCGCAAGGTCTGGGCACGCATCCGCGTGGTGGCCAGCGCGCCGATCAAGCAGGACACC 
ACCGCCAAGCTGGCGCTCACCGGGATCACCGGCACCTCGATCATCCAGCTCAGCAGCGGCACGCCCGCCAGC 
CCGATGCTGGAGGGCAAGGACGGGAAGATCCCGGTGATCGTCGCCACGCCCTCGCCGCTGACCCAGTTGCTG 
AGCAACGGCGAAGACCTGATGGGCAACATCAACCAGCTCATCGCGCGCTTCAGCAACCTGCTCTCCGAGGAA 
AACACAGCGCGCATCAGCCGCACCCTCGACCATCTCGACCAGGCCACCGGCGCGCTCTCCGCCGAGCGCGAG 
AACGTCAGCGCGGTGATGCAGCAGTTGGCCCAGGCGAGCAGGCAGGCCAACGCCGCGCTGGCCCAGGCCAGC 
GAGTTGATGCGCAGCGCCAACGGCCTGCTCAACGAGCAAGGCAAGGGGATGCTGGAAAACGCCAACAAGACC 
ATGGCTTCGCTGGAGCGCACCAGCGCCACCCTCGACCAGTTGATCAGCGAGAATCGCCACTCGCTGGACGGC 
GGCATCCAGGGACTCGCCGAGCTGGGCCCGGCGGTCAGCGAACTGCGCGATACCCTGGCGGCACTGCGCGGA 
ATCAGCCGGCGCCTGGAAGAGAACCCGGCGAACTACCTGCTGGGCCGGGAAAAAACCAAGGAGTTCACCCCA 
TGA