ViewGene
Locus Name:
GeneID:
Location:

GeneID:2511
TrivialName: PA14_02650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02650
PAO1 Ortholog Locus:PA0217
Sequence Length:930
Protein Length:309
Start: 235770
Stop: 234841
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03606.1|AE004459_10 (AE004459) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 309/309 (100%), Positives = 309/309 (100%)
Sequence:
ATGCTGATCGACGAAGAAATCACCCTCAAGAAGCTGGAAACCTTCCTCGCCTTCATGCGCACCGGCAACCTG
GCGCGCGCGGCGGCGGAACTGGGCACCAGCAACGTCAGCGTGCACCGCGCCATCCACTCGCTGGAAAGCGCC
CTGCGCTGCCCGCTGTTCAAGCACGAGGGACGCAACCTGACCCCGCTGGAAAGCGCCTACGTGCTCGAGGAG
CGCGCGCAGAAGCTGGTCCAGGAGGTACTCGACACGGTGCGCCTGACCCGCGAGGCGGCCGGCTTCTCCGCC
GAGCGCTTCAAGCTCGGCGCGCTCTATTCGCTGACGGTGAAGACCGTGCCGCAACTGATCATGGGCCTCAAG
CTGCGACGCAGCGCGCTGAATATCGACCTGATCCTCGGCTCCAACGTCGACCTGTTCTACCAGCTGAAGAAC
ATGGAGCTGGACGCCATCCTGGTGTCGCTCAACGACAGCGTCAGCGATCCCGACTGCGAGCACCTGCCGCTG
TTCTCCGATGACATCTTCCTCGCCGTGCCGGTGGACTCGCCCTACGCCAGGCTCGCCGAGATCGATCTCAGC
ACCCTGCGCGACACGCCCTTCGTCACGCTCACCCAGGGCTTCGCCACCCATCAGGACGGCACCCGGGTGTTC
CAGCAGGCCGGTTTCGAACCGCAGATCGCCATGCAGGTGAACGACATCTTCACCCTCCTCAGCATGGTCAGC
TCGGGGGTCGGCCATGCGCTGCTGCCCAAACGCATCGAGGCGGTCTACGAGAACCGCGTGCGGCTGATCCCG
CTGCAACCGCGCTATCGCCTGCAGCAGCACATCGGCGTGGTGTTCCTCAAGGCCAAGGAGCGCGACCCGAAC
CTGCTGGCGTTGCTCGCGGAGTGCCGGATGTACAGCCTGCGCCTGGAGCAGGAGGCGGCGGGATAG
Translation:
MLIDEEITLKKLETFLAFMRTGNLARAAAELGTSNVSVHRAIHSLESALRCPLFKHEGRNLTPLESAYVLEE
RAQKLVQEVLDTVRLTREAAGFSAERFKLGALYSLTVKTVPQLIMGLKLRRSALNIDLILGSNVDLFYQLKN
MELDAILVSLNDSVSDPDCEHLPLFSDDIFLAVPVDSPYARLAEIDLSTLRDTPFVTLTQGFATHQDGTRVF
QQAGFEPQIAMQVNDIFTLLSMVSSGVGHALLPKRIEAVYENRVRLIPLQPRYRLQQHIGVVFLKAKERDPN
LLALLAECRMYSLRLEQEAAG*
AnnotationID:2519GeneID:2511
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 12:12:35
Gene Name:
Confidence Code:3
GeneProduct:putative malonate utilization transcriptional regulator
Cell Localization:()
Synonyms:PA0217
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58505.1| (AE016874) malonate utilization transcriptional regulator
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 308

 Score =  504 bits (1297), Expect = e-142
 Identities = 256/307 (83%), Positives = 282/307 (91%)

>gb|AAC45461.1| (U95087) MdcR [Klebsiella pneumoniae]
          Length = 308

 Score =  260 bits (664), Expect = 8e-69
 Identities = 138/299 (46%), Positives = 197/299 (65%), Gaps = 1/299 (0%)

>gb|AAA21364.1| (U14004) transacting regulator [Klebsiella pneumoniae]
          Length = 308

 Score =  260 bits (664), Expect = 8e-69
 Identities = 138/299 (46%), Positives = 197/299 (65%), Gaps = 1/299 (0%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.0% aligned
Score =  107 bits (267), Expect = 2e-24
Identities = 79/293 (26%), Positives = 131/293 (44%), Gaps = 7/293 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues,  98.1% aligned
Score =  104 bits (260), Expect = 2e-23
Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 5/208 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5025




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22171




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33565




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2511_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2511
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4193
                           PA0217_tr
                           translation of PA0217
                           309
                           99.99
                           99.99
                           0
                           1539.0
     

     
     
123902
                           gb|AAG03606.1|AE004459_10
                           (AE004459) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           309
                           99.99
                           99.99
                           0
                           1539.0
     

     
     
123903
                           gb|AAO58505.1|
                           (AE016874) malonate utilization transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           309
                           82.84
                           91.26
                           1
                           1297.0
     

     
     
123904
                           gb|AAC45461.1|
                           (U95087) MdcR [Klebsiella pneumoniae]
                           316
                           44.93
                           65.18
                           15
                           663.0
     

     
     
123905
                           gb|AAA21364.1|
                           (U14004) transacting regulator [Klebsiella pneumoniae]
                           316
                           44.93
                           65.18
                           15
                           662.0
     

     






      

          
GC ORFID: 45513How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0217Glimmer Score: 

          
Start: 6037111Stop: 6036182

          
Length: 930


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0217 translation of PA0217Homolog Bit Score 597.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3741 (ORF: BLASTX 501.0), t_PA0217 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGATCGACGAAGAAATCACCCTCAAGAAGCTGGAAACCTTCCTCGCCTTCATGCGCACCGGCAACCTG 
GCGCGCGCGGCGGCGGAACTGGGCACCAGCAACGTCAGCGTGCACCGCGCCATCCACTCGCTGGAAAGCGCC 
CTGCGCTGCCCGCTGTTCAAGCACGAGGGACGCAACCTGACCCCGCTGGAAAGCGCCTACGTGCTCGAGGAG 
CGCGCGCAGAAGCTGGTCCAGGAGGTACTCGACACGGTGCGCCTGACCCGCGAGGCGGCCGGCTTCTCCGCC 
GAGCGCTTCAAGCTCGGCGCGCTCTATTCGCTGACGGTGAAGACCGTGCCGCAACTGATCATGGGCCTCAAG 
CTGCGACGCAGCGCGCTGAATATCGACCTGATCCTCGGCTCCAACGTCGACCTGTTCTACCAGCTGAAGAAC 
ATGGAGCTGGACGCCATCCTGGTGTCGCTCAACGACAGCGTCAGCGATCCCGACTGCGAGCACCTGCCGCTG 
TTCTCCGATGACATCTTCCTCGCCGTGCCGGTGGACTCGCCCTACGCCAGGCTCGCCGAGATCGATCTCAGC 
ACCCTGCGCGACACGCCCTTCGTCACGCTCACCCAGGGCTTCGCCACCCATCAGGACGGCACCCGGGTGTTC 
CAGCAGGCCGGTTTCGAACCGCAGATCGCCATGCAGGTGAACGACATCTTCACCCTCCTCAGCATGGTCAGC 
TCGGGGGTCGGCCATGCGCTGCTGCCCAAACGCATCGAGGCGGTCTACGAGAACCGCGTGCGGCTGATCCCG 
CTGCAACCGCGCTATCGCCTGCAGCAGCACATCGGCGTGGTGTTCCTCAAGGCCAAGGAGCGCGACCCGAAC 
CTGCTGGCGTTGCTCGCGGAGTGCCGGATGTACAGCCTGCGCCTGGAGCAGGAGGCGGCGGGATAG