ViewGene

Locus Name:
GeneID:
Location:

GeneID:251
TrivialName: PA14_21730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21730
PAO1 Ortholog Locus:PA3268
Sequence Length:2166
Protein Length:721
Start: 1889072
Stop: 1891237
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06656.1|AE004749_5 (AE004749) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
Identities = 720/721 (99%), Positives = 721/721 (100%)
Sequence:
ATGTCGTCCGTGAGTTCGTTGTCGCGCCTGGCCGTCGCCATCGCGCTGGGTGTGTCCATGCAGGCGGCGCAG
GCCGAAGAGGAAGCCAAGGAGCTGGGCACGGTCACCGTGGTCGGCGACTGGCTGGGCGAAGCCGACCAGGCG
GTGGTGCAGAACCATCCCGGCGCGCGCAGCGTGGTGCGTCGTCGGGAAATGCTCGAGAGCGGTGCGCAGAAC
GTCCGCGACGTGCTGCGCAAGGTGCCCGGCGTGCAAGTGCAGGACAACAACGGTACCGGCGGCAGCGACATC
TCCCTGAACGTCGGGGTGCGTGGCCTGACTTCACGCCTGTCGCCGCGCTCGACGGTGATGATCGACGGCGTG
CCGGCGGCGGTGGCGCCCTACGGCCAGCCGCAGCTGTCGATGATGCCGTTGTCCATCGGCAACCTGGAGAGC
ATCGACGTCGTGCGCGGCGCCGGCTCGGTGCGCTACGGCCCGCAGAACGTCGGCGGGGTGATCAACTTCGTG
ACCCGGGCGATTCCGGAGAAGTTCTCCGGCGAAATCGGCACCACCATCGAGCATGCCGGCCACGGCGGCTGG
AAGAAGCTCAACCAGGCGTTCCTCGGCGGGACCGCCGACAACGGCCTGGGCGTGGCGCTGCTGTATTCCGGG
GTGAAGGGCGCCGACTACCGCGACGGCAACAACGACAACGATATTGATGACGTGCTGCTCAAGACCCATTGG
CAGCTCACCGACAGCGACCAGTTGGCGGCCAACTTCCACTACTACGACGCCTACGCCGATATGCCGGGCGGC
CTGACCCAGGCGCAGTACGACGACGATCCCTTCCAGTCGGTGCGCGACTGGGACAACTTCCGTGGTCGGCGC
AAGGACTTCTCGCTGAAGTACACCCGCCAGGTCGACGACCTCACCCAGTTCGAGGTGCTCACCTACTACAGC
GACAGTTTCCGCGGCAGCAGCATCGCCGCGCGCAACCTCAGGACCATCACCTCGTACCCGCGCGACTACCAT
GTGTTCGCGGTGGAGCCGCGGGTCTCGCGGATCTTCTTCGCCGGCCCGACCACCCAGGAGATCGGCATCGGC
TACCGCTACCTGAAGGAAGCGATGAACGAGCGTGCCAGCCAACTGGCACTGGTCGACAATGTGCCGACCGTG
CGTCCCGGCTCGGACGGCCATACCTACCAGGACCGTACCGGCGGTACCGAGGCCAGCGCCTTCTACATCGAC
GACAAGATCGATGTCGGCAACTGGACCATCACCCCCGGCATCCGCTTCGAGAAGATCGACAGCGACTGGCGC
GACCGCCCGGTGCTCGGCCTGAACGGCAAGCCGGTGCAGGAGAAGAAGCGCAGCAAGGACTACAACGAACCG
CTGCCGGCGCTGAGCCTGATGTATCACTTGAGCGACGAGTGGAAGCTGTTCGCCAACTACTCCGAATCGTTC
GGCAGCCTGCAGTATTTCCAGCTCGGCCAGGGCGGCAGCGGCAACGATACCGCCGCCGGCCTGGAGCCGGAG
AAGGCCAAGACCTACGAACTGGGCACGCGCTACGACAACGGCAGCTGGGGCGGCGAGATCACGCTGTTCTAC
ATCGACTTCGACGACGAGCTGCAGTACGTCAGCAACGACGTCGGCTGGACCAACCTCGGCGCCACCAAGCAC
CAGGGCATCGAGACTTCCGGCCACTATGACTTCGCCGCTCTCGATCCGCGCCTGGACGGCCTGTCGGTCTAC
GGCAGCCTCACCTATACCCGCGCCACCTACGAAGGCGACATTCCCTCCTTCAAGGGGCGCGACCTGCCGCTC
TACTCGCGCCAGGTGGCCACCGCCGGGGTGCGCTACGAGGTCGACCGCTGGACCTACAACCTCGACGCCTTC
GCCCAGTCCATGCAGCGCGCGCCAGGGCTGAGCACCGACAGCCAGGGCAACTTCACCCACAACTACATCACC
GAGCCCAGCGCCGACGGCCAGTACGGCGACATTCCCGGCTACGTGACCTGGAATGCCCGCGTCGGCTACGAC
TTCGGCCCGCAGGCGTCGAACCTGAAGCTCGGCCTCGGGGTGAAGAACCTGTTCGACAAGCAGTATTTCACC
CGCTCCAGCGACAACAATTCGGGAATCTACGTGGGTCAGCCGCGAACGCTGTTCATGCAGGCCAGCGTCGGT
TTCTGA
Translation:
MSSVSSLSRLAVAIALGVSMQAAQAEEEAKELGTVTVVGDWLGEADQAVVQNHPGARSVVRRREMLESGAQN
VRDVLRKVPGVQVQDNNGTGGSDISLNVGVRGLTSRLSPRSTVMIDGVPAAVAPYGQPQLSMMPLSIGNLES
IDVVRGAGSVRYGPQNVGGVINFVTRAIPEKFSGEIGTTIEHAGHGGWKKLNQAFLGGTADNGLGVALLYSG
VKGADYRDGNNDNDIDDVLLKTHWQLTDSDQLAANFHYYDAYADMPGGLTQAQYDDDPFQSVRDWDNFRGRR
KDFSLKYTRQVDDLTQFEVLTYYSDSFRGSSIAARNLRTITSYPRDYHVFAVEPRVSRIFFAGPTTQEIGIG
YRYLKEAMNERASQLALVDNVPTVRPGSDGHTYQDRTGGTEASAFYIDDKIDVGNWTITPGIRFEKIDSDWR
DRPVLGLNGKPVQEKKRSKDYNEPLPALSLMYHLSDEWKLFANYSESFGSLQYFQLGQGGSGNDTAAGLEPE
KAKTYELGTRYDNGSWGGEITLFYIDFDDELQYVSNDVGWTNLGATKHQGIETSGHYDFAALDPRLDGLSVY
GSLTYTRATYEGDIPSFKGRDLPLYSRQVATAGVRYEVDRWTYNLDAFAQSMQRAPGLSTDSQGNFTHNYIT
EPSADGQYGDIPGYVTWNARVGYDFGPQASNLKLGLGVKNLFDKQYFTRSSDNNSGIYVGQPRTLFMQASVG
F*
AnnotationID:261GeneID:251
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 18:06:24
Gene Name:
Confidence Code:3
GeneProduct:putative TonB-dependent receptor
Cell Localization:()
Synonyms:fecA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative outer membrane iron(III) dicitrate receptor
Functional Category Confidence Code:5
COGs:pfam00593,COG4772,COG1629,COG4771
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66492.1|AE016278_3 (AE016777) FecA-like outer membrane receptor [Pseudomonas putida
           KT2440]
          Length = 809

 Score = 1123 bits (2905), Expect = 0.0
 Identities = 530/687 (77%), Positives = 602/687 (87%)

>gb|AAC77247.1| (AE000499) outer membrane receptor; citrate-dependent iron
           transport, outer membrane receptor [Escherichia coli
           K12]
          Length = 774

 Score =  591 bits (1524), Expect = e-168
 Identities = 318/694 (45%), Positives = 435/694 (62%), Gaps = 41/694 (5%)

Structural Features:
pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues, 100.0% aligned
Score =  200 bits (509), Expect = 5e-52
Identities = 155/753 (20%), Positives = 248/753 (32%), Gaps = 123/753 (16%)

COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate 
[Inorganic ion transport and metabolism]
CD-Length = 753 residues,  99.1% aligned
Score =  809 bits (2091), Expect = 0.0
Identities = 310/761 (40%), Positives = 410/761 (53%), Gaps = 55/761 (7%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  99.3% aligned
Score =  145 bits (366), Expect = 1e-35
Identities = 146/782 (18%), Positives = 231/782 (29%), Gaps = 80/782 (10%)

COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins 
CD-Length = 699 residues,  98.9% aligned
Score =  142 bits (358), Expect = 2e-34
Identities = 159/774 (20%), Positives = 272/774 (35%), Gaps = 141/774 (18%)
Genomic Context:
Comment:
ReferenceID:505
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17647
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32275
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:251_cdd.html
URL:
Homologs By Global Alignment
Gene ID:251

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
425 PA3268_tr translation of PA3268 721 99.86 99.99 0 3793.0
23336 gb|AAG06656.1|AE004749_5 (AE004749) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1] 721 99.86 99.99 0 3793.0
23337 gb|AAN66492.1|AE016278_3 (AE016777) FecA-like outer membrane receptor [Pseudomonas putida KT2440] 809 66.37 76.14 88 2901.0
23340 gb|AAN70186.1|AE016658_3 (AE016791) outer membrane iron(III) dicitrate receptor [Pseudomonas putida KT2440] 820 41.70 55.12 145 1579.0
426 PA3901_tr translation of PA3901 826 41.16 54.72 147 1605.0
GC ORFID: 43253How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3268Glimmer Score:
Start: 3064859Stop: 3062694
Length: 2166
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3268 translation of PA3268Homolog Bit Score 1465.0
Other Homologs: t_PA3268 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGTCCGTGAGTTCGTTGTCGCGCCTGGCCGTCGCCATCGCGCTGGGTGTGTCCATGCAGGCGGCGCAG
GCCGAAGAGGAAGCCAAGGAGCTGGGCACGGTCACCGTGGTCGGCGACTGGCTGGGCGAAGCCGACCAGGCG
GTGGTGCAGAACCATCCCGGCGCGCGCAGCGTGGTGCGTCGTCGGGAAATGCTCGAGAGCGGTGCGCAGAAC
GTCCGCGACGTGCTGCGCAAGGTGCCCGGCGTGCAAGTGCAGGACAACAACGGTACCGGCGGCAGCGACATC
TCCCTGAACGTCGGGGTGCGTGGCCTGACTTCACGCCTGTCGCCGCGCTCGACGGTGATGATCGACGGCGTG
CCGGCGGCGGTGGCGCCCTACGGCCAGCCGCAGCTGTCGATGATGCCGTTGTCCATCGGCAACCTGGAGAGC
ATCGACGTCGTGCGCGGCGCCGGCTCGGTGCGCTACGGCCCGCAGAACGTCGGCGGGGTGATCAACTTCGTG
ACCCGGGCGATTCCGGAGAAGTTCTCCGGCGAAATCGGCACCACCATCGAGCATGCCGGCCACGGCGGCTGG
AAGAAGCTCAACCAGGCGTTCCTCGGCGGGACCGCCGACAACGGCCTGGGCGTGGCGCTGCTGTATTCCGGG
GTGAAGGGCGCCGACTACCGCGACGGCAACAACGACAACGATATTGATGACGTGCTGCTCAAGACCCATTGG
CAGCTCACCGACAGCGACCAGTTGGCGGCCAACTTCCACTACTACGACGCCTACGCCGATATGCCGGGCGGC
CTGACCCAGGCGCAGTACGACGACGATCCCTTCCAGTCGGTGCGCGACTGGGACAACTTCCGTGGTCGGCGC
AAGGACTTCTCGCTGAAGTACACCCGCCAGGTCGACGACCTCACCCAGTTCGAGGTGCTCACCTACTACAGC
GACAGTTTCCGCGGCAGCAGCATCGCCGCGCGCAACCTCAGGACCATCACCTCGTACCCGCGCGACTACCAT
GTGTTCGCGGTGGAGCCGCGGGTCTCGCGGATCTTCTTCGCCGGCCCGACCACCCAGGAGATCGGCATCGGC
TACCGCTACCTGAAGGAAGCGATGAACGAGCGTGCCAGCCAACTGGCACTGGTCGACAATGTGCCGACCGTG
CGTCCCGGCTCGGACGGCCATACCTACCAGGACCGTACCGGCGGTACCGAGGCCAGCGCCTTCTACATCGAC
GACAAGATCGATGTCGGCAACTGGACCATCACCCCCGGCATCCGCTTCGAGAAGATCGACAGCGACTGGCGC
GACCGCCCGGTGCTCGGCCTGAACGGCAAGCCGGTGCAGGAGAAGAAGCGCAGCAAGGACTACAACGAACCG
CTGCCGGCGCTGAGCCTGATGTATCACTTGAGCGACGAGTGGAAGCTGTTCGCCAACTACTCCGAATCGTTC
GGCAGCCTGCAGTATTTCCAGCTCGGCCAGGGCGGCAGCGGCAACGATACCGCCGCCGGCCTGGAGCCGGAG
AAGGCCAAGACCTACGAACTGGGCACGCGCTACGACAACGGCAGCTGGGGCGGCGAGATCACGCTGTTCTAC
ATCGACTTCGACGACGAGCTGCAGTACGTCAGCAACGACGTCGGCTGGACCAACCTCGGCGCCACCAAGCAC
CAGGGCATCGAGACTTCCGGCCACTATGACTTCGCCGCTCTCGATCCGCGCCTGGACGGCCTGTCGGTCTAC
GGCAGCCTCACCTATACCCGCGCCACCTACGAAGGCGACATTCCCTCCTTCAAGGGGCGCGACCTGCCGCTC
TACTCGCGCCAGGTGGCCACCGCCGGGGTGCGCTACGAGGTCGACCGCTGGACCTACAACCTCGACGCCTTC
GCCCAGTCCATGCAGCGCGCGCCAGGGCTGAGCACCGACAGCCAGGGCAACTTCACCCACAACTACATCACC
GAGCCCAGCGCCGACGGCCAGTACGGCGACATTCCCGGCTACGTGACCTGGAATGCCCGCGTCGGCTACGAC
TTCGGCCCGCAGGCGTCGAACCTGAAGCTCGGCCTCGGGGTGAAGAACCTGTTCGACAAGCAGTATTTCACC
CGCTCCAGCGACAACAATTCGGGAATCTACGTGGGTCAGCCGCGAACGCTGTTCATGCAGGCCAGCGTCGGT
TTCTGA