ViewGene
Locus Name:
GeneID:
Location:

GeneID:2509
TrivialName: PA14_72430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72430
PAO1 Ortholog Locus:PA5488
Sequence Length:879
Protein Length:292
Start: 6453837
Stop: 6452959
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08873.1|AE004961_8 (AE004961) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 292/292 (100%), Positives = 292/292 (100%)
Sequence:
ATGTTGCGCCGCTGGCAGCGTGAACCTCGGGTCGCAGGCAGCTGCGACCCGCGAGTGAACCCCTCCTGTGAC
GATTCGCGGGAGCTGCCCGACGACGGCCGCCTGCGCCTTCTCAGCTTCAACATCCAGGTCGGTATCAGCACC
GAGCGCTACCGCCACTACCTGACCCGCGGTTGGCAGCACCTGCTGCCCCACGCAGGGCGGGCGACCAACCTG
AAGCGGATCGGCGAACTGCTCGCCGACTACGATCTCGTCGCCCTCCAGGAAGCCGACGGCGGCAGCCTGCGT
TCCGGCTACGTCAACCAGGTCGAGCACCTGGCCCAGTTGGGGGCGTTCCCCTACTGGTACCAGCAGCTCAAC
CGCAACCTCGGGCGTATCGCCCAGCACAGCAACGGCCTGCTCAGCCGCTGGCGGCCGACCCTGCTGGAAGAT
CATCCGTTGCCCGGTCCGCCGGGGCGCGGCGCGATCTTCGTGCGTTTTGGCGAAGGCGCCGACGCGCTGGTG
GTAGTGATGATGCATCTCGCTCTCGGCGCTCGCACCCGCACCCGCCAGCTCGCCTATATCCGCGAGCTGATC
GGCGACTACCGCCACCAGGTGCTGATGGGCGACATGAACACCCATGCCGTCGATCTTCTGGAAAACTCGCCC
CTGCGCGACCTCGGCCTGATGGCGCCGCAGGTCGAGGCGACGTTTCCCAGCTGGCGGCCGCAGCGCAATCTC
GACCACATCCTGCTCAGTTCCGATCTCGCTCTCGAGCGGGTCGACGTGCTCGACCAGCCGATCTCCGACCAT
CTGCCGGTATCGGTGGAGATTCGCCTGCCGGACAACCTGCGCGACAAGGCCtTgGTCGTGCGCGGGGATGCC
GGGAGTCCGCCATGA
Translation:
MLRRWQREPRVAGSCDPRVNPSCDDSRELPDDGRLRLLSFNIQVGISTERYRHYLTRGWQHLLPHAGRATNL
KRIGELLADYDLVALQEADGGSLRSGYVNQVEHLAQLGAFPYWYQQLNRNLGRIAQHSNGLLSRWRPTLLED
HPLPGPPGRGAIFVRFGEGADALVVVMMHLALGARTRTRQLAYIRELIGDYRHQVLMGDMNTHAVDLLENSP
LRDLGLMAPQVEATFPSWRPQRNLDHILLSSDLALERVDVLDQPISDHLPVSVEIRLPDNLRDKALVVRGDA
GSPP*
AnnotationID:2517GeneID:2509
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 07:07:19
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA5488
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3568
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53885.1| (AE016857) endonuclease/exonuclease/phosphatase family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 291

 Score =  447 bits (1151), Expect = e-125
 Identities = 222/284 (78%), Positives = 243/284 (85%), Gaps = 1/284 (0%)








 
Structural Features:
COG3568, ElsH, Metal-dependent hydrolase 
CD-Length = 259 residues, 100.0% aligned
Score =  173 bits (441), Expect = 1e-44
Identities = 88/264 (33%), Positives = 111/264 (42%), Gaps = 31/264 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5021




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22167




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33238




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2509_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2509
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4191
                           PA5488_tr
                           translation of PA5488
                           292
                           99.99
                           99.99
                           0
                           1538.0
     

     
     
123865
                           gb|AAG08873.1|AE004961_8
                           (AE004961) hypothetical protein PA5488 [Pseudomonas aeruginosa PAO1]
                           292
                           99.99
                           99.99
                           0
                           1538.0
     

     
     
123867
                           gb|AAN65762.1|AE016202_5
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           292
                           76.71
                           82.53
                           8
                           1133.0
     

     
     
123866
                           gb|AAO53885.1|
                           (AE016857) endonuclease/exonuclease/phosphatase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           299
                           74.58
                           81.60
                           15
                           1148.0
     

     
     
123868
                           gb|AAO13006.1|
                           (AY171618) conserved hypothetical protein [Pseudomonas fluorescens]
                           292
                           66.43
                           71.57
                           52
                           1017.0
     

     






      

          
GC ORFID: 45511How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5488Glimmer Score: 

          
Start: 5717526Stop: 5716648

          
Length: 879


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5488 translation of PA5488Homolog Bit Score 597.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3900 (ORF: BLASTX 449.0), t_PA5488 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGCGCCGCTGGCAGCGTGAACCTCGGGTCGCAGGCAGCTGCGACCCGCGAGTGAACCCCTCCTGTGAC 
GATTCGCGGGAGCTGCCCGACGACGGCCGCCTGCGCCTTCTCAGCTTCAACATCCAGGTCGGTATCAGCACC 
GAGCGCTACCGCCACTACCTGACCCGCGGTTGGCAGCACCTGCTGCCCCACGCAGGGCGGGCGACCAACCTG 
AAGCGGATCGGCGAACTGCTCGCCGACTACGATCTCGTCGCCCTCCAGGAAGCCGACGGCGGCAGCCTGCGT 
TCCGGCTACGTCAACCAGGTCGAGCACCTGGCCCAGTTGGGGGCGTTCCCCTACTGGTACCAGCAGCTCAAC 
CGCAACCTCGGGCGTATCGCCCAGCACAGCAACGGCCTGCTCAGCCGCTGGCGGCCGACCCTGCTGGAAGAT 
CATCCGTTGCCCGGTCCGCCGGGGCGCGGCGCGATCTTCGTGCGTTTTGGCGAAGGCGCCGACGCGCTGGTG 
GTAGTGATGATGCATCTCGCTCTCGGCGCTCGCACCCGCACCCGCCAGCTCGCCTATATCCGCGAGCTGATC 
GGCGACTACCGCCACCAGGTGCTGATGGGCGACATGAACACCCATGCCGTCGATCTTCTGGAAAACTCGCCC 
CTGCGCGACCTCGGCCTGATGGCGCCGCAGGTCGAGGCGACGTTTCCCAGCTGGCGGCCGCAGCGCAATCTC 
GACCACATCCTGCTCAGTTCCGATCTCGCTCTCGAGCGGGTCGACGTGCTCGACCAGCCGATCTCCGACCAT 
CTGCCGGTATCGGTGGAGATTCGCCTGCCGGACAACCTGCGCGACAAGGCCtTgGTCGTGCGCGGGGATGCC 
GGGAGTCCGCCATGA