ViewGene
Locus Name:
GeneID:
Location:

GeneID:2508
TrivialName: PA14_66150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66150
PAO1 Ortholog Locus:PA5003
Sequence Length:897
Protein Length:298
Start: 5893323
Stop: 5892427
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08388.1|AE004913_3 (AE004913) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 295/298 (98%), Positives = 295/298 (98%)
Sequence:
ATGCTGAACAGGTTGCGCGCCTTCCGCGAACGCGGTTGGCGCGAAGTGGACGCGCCGACCTACGCCCAGGCC
TGGCAGCGTTTCGGCGGCAGCGTCGCGACCCACCCGCTGGTGGTCGAGCAGCTCGCCGAAATGGCTGGAATC
CCGGTGCGTTACCTGGGTTGGGAGAGCGCTGGCGAACTGGTTGCGGCGATCCCGACCTGGGGCCGCCACCTG
GCGTTGTCCAAGGACGTGCTCAAGCGGCGCGGCAAGAAGGGCCTGTACGACCTGGGCAACGCCGAACTGATC
CTGCCGGTGGCCGGCGATGCCCGCATCGCCCTCCGCCATGGGGGACGCTACCTGTCGGTGCTGCATGAGCGG
AACATCGTCACGCTGCGCCCGCAGGCCGAGCAACTGGCTTTCGCTCGCGCCCCCGAGGATTTCTCCAAGAAG
TTCCGCTACAACCAGCGGCGCGAAGTGCGCCTGGTGGAGGAGGCCGGTGGCCAGGTGCGCCAGGCAGACAGC
TTCGCCCCGGCCGAGTTCGCCGCCATCTATCTTGAACTGTTCCAGCGTCGCTGGGGTTTCCCGGCCACCGGC
GCGGAGCGCATGGCCGAGGTCTTCGAGCGGCTGCGCGAATTGCTGCGCGGCTCGGTCCTGCTGCTCAACGAC
CAGCCCATCGCGGTCCAGGTACTGTATCGCGCCGAAGCGCCGGGCTGGCTCAGCGTCGAGTACATCAACGGC
GGCGTCGATCCGCAGACCCGCGAGTTCAGCCCTGGCAGCGTGCTCAGTTACCTGAACACCCAGGCCGCCTGG
GAGGATGCGCGAGCGCTGGGCAAACCCCTGCGCTATTCGTTCGGTCGCGCCGACCGCGAATACAAGGATCGC
TGGTGCCATCCTTCTCCGGTCTTCCAGGTCTGA
Translation:
MLNRLRAFRERGWREVDAPTYAQAWQRFGGSVATHPLVVEQLAEMAGIPVRYLGWESAGELVAAIPTWGRHL
ALSKDVLKRRGKKGLYDLGNAELILPVAGDARIALRHGGRYLSVLHERNIVTLRPQAEQLAFARAPEDFSKK
FRYNQRREVRLVEEAGGQVRQADSFAPAEFAAIYLELFQRRWGFPATGAERMAEVFERLRELLRGSVLLLND
QPIAVQVLYRAEAPGWLSVEYINGGVDPQTREFSPGSVLSYLNTQAAWEDARALGKPLRYSFGRADREYKDR
WCHPSPVFQV*
AnnotationID:2516GeneID:2508
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 09:09:02
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5003
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam07395
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam07395, Mig-14, Mig-14. This family contains a number of bacterial mig-14 proteins 
(approximately 270 residues long). 
In Salmonella, mig-14 contributes to resistance to antimicrobial peptides
CD-Length = 264 residues, 100.0% aligned
Score =  418 bits (1076), Expect = 3e-118
Identities = 204/264 (77%), Positives = 228/264 (86%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5019




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22165




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35052




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2508_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2508
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4190
                           PA5003_tr
                           translation of PA5003
                           298
                           98.99
                           98.99
                           0
                           1540.0
     

     
     
123862
                           gb|AAG08388.1|AE004913_3
                           (AE004913) hypothetical protein PA5003 [Pseudomonas aeruginosa PAO1]
                           298
                           98.99
                           98.99
                           0
                           1540.0
     

     
     
123863
                           gb|AAN70509.1|AE016692_8
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           298
                           73.48
                           83.89
                           0
                           1163.0
     

     
     
123864
                           gb|AAO58418.1|
                           (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           298
                           68.45
                           81.54
                           0
                           1101.0
     

     






      

          
GC ORFID: 45510How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5003Glimmer Score: 

          
Start: 5157006Stop: 5156110

          
Length: 897


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5003 translation of PA5003Homolog Bit Score 597.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3395 (ORF: BLASTX 436.0), t_PA5003 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAACAGGTTGCGCGCCTTCCGCGAACGCGGTTGGCGCGAAGTGGACGCGCCGACCTACGCCCAGGCC 
TGGCAGCGTTTCGGCGGCAGCGTCGCGACCCACCCGCTGGTGGTCGAGCAGCTCGCCGAAATGGCTGGAATC 
CCGGTGCGTTACCTGGGTTGGGAGAGCGCTGGCGAACTGGTTGCGGCGATCCCGACCTGGGGCCGCCACCTG 
GCGTTGTCCAAGGACGTGCTCAAGCGGCGCGGCAAGAAGGGCCTGTACGACCTGGGCAACGCCGAACTGATC 
CTGCCGGTGGCCGGCGATGCCCGCATCGCCCTCCGCCATGGGGGACGCTACCTGTCGGTGCTGCATGAGCGG 
AACATCGTCACGCTGCGCCCGCAGGCCGAGCAACTGGCTTTCGCTCGCGCCCCCGAGGATTTCTCCAAGAAG 
TTCCGCTACAACCAGCGGCGCGAAGTGCGCCTGGTGGAGGAGGCCGGTGGCCAGGTGCGCCAGGCAGACAGC 
TTCGCCCCGGCCGAGTTCGCCGCCATCTATCTTGAACTGTTCCAGCGTCGCTGGGGTTTCCCGGCCACCGGC 
GCGGAGCGCATGGCCGAGGTCTTCGAGCGGCTGCGCGAATTGCTGCGCGGCTCGGTCCTGCTGCTCAACGAC 
CAGCCCATCGCGGTCCAGGTACTGTATCGCGCCGAAGCGCCGGGCTGGCTCAGCGTCGAGTACATCAACGGC 
GGCGTCGATCCGCAGACCCGCGAGTTCAGCCCTGGCAGCGTGCTCAGTTACCTGAACACCCAGGCCGCCTGG 
GAGGATGCGCGAGCGCTGGGCAAACCCCTGCGCTATTCGTTCGGTCGCGCCGACCGCGAATACAAGGATCGC 
TGGTGCCATCCTTCTCCGGTCTTCCAGGTCTGA