ViewGene
Locus Name:
GeneID:
Location:

GeneID:2507
TrivialName: PA14_11250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11250
PAO1 Ortholog Locus:PA4069
Sequence Length:885
Protein Length:294
Start: 978924
Stop: 979808
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07456.1|AE004823_2 (AE004823) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 294/294 (100%), Positives = 294/294 (100%)
Sequence:
ATGCGAATGCGCCTGATGCTTTTGGGCGGCGGTAATGCCCTTGGACAGGCGCTGATCCGCCTAGGGGCGGAG
GAAGACATCGGTTTCCTCGCGCCCAGACCACCCGAGCAGGGCTGGGATGCCGCCAGCCTCACCACCCTGCTG
GACGAAACGCGCCCCGACGCGGTGATCAACCTCGCCTTCTACCACGACTGGTTCCAGGCCGAGCAGGTCGAG
GCGGAGCGCCTGGGCGCCCAGGAGCGCGCCGTCGAGCGCCTCGCGGAACTCTGCCAGCACTACGAGATCCTG
CTGGTCCAGCCGTCCAGCTACCGGGTCTTCGACGGCGCCCGCGCCACCGCCTACAGCGAGAAGGACGAGACC
CTTCCGCTGGGCCTGCGTGGCCAGGCGCTCTGGCGCATGGAGCAGAGCGTGCGCGCGGCCTGCCCGCGACAT
GTGCTGATCCGCTTCGGCTGGCTGCTGGACGAAAGCCCGAACGGCTTGCTGGGACGTTTCCTCAGCCGCGCC
GAACAACCGCAGCCGCTGTTCCTCGCCGACGACCGGCGCGGCAACCCGACGCCGGTGGACGACGCCGCGCGG
GTGGTGCTCTCTGTGCTCAAGCAGCTCGACTGCCAGGCGCCGCTGTGGGGCACCTACCACTACGGCGGACTG
GAAGCGACCACCACCCTGGCGCTGGGACAGGTGATCCTCAACGAGGCGCGTACCTATCGCTCCAACCTGATC
CAGGAGCCTTCGGCGGAGGCCCATGCCGCGCGCCCGGACGCGCTCGACGAGCCGCAGCACGCGGTGATGGTC
TGCAAGAAGATCCTCCACACCTTCGGCATCAAGCCGCGCGCCTGGCGCGCAGGTTTGCCGGCTCTATTGGAC
AGGTACTACAGGCATGTTTGA
Translation:
MRMRLMLLGGGNALGQALIRLGAEEDIGFLAPRPPEQGWDAASLTTLLDETRPDAVINLAFYHDWFQAEQVE
AERLGAQERAVERLAELCQHYEILLVQPSSYRVFDGARATAYSEKDETLPLGLRGQALWRMEQSVRAACPRH
VLIRFGWLLDESPNGLLGRFLSRAEQPQPLFLADDRRGNPTPVDDAARVVLSVLKQLDCQAPLWGTYHYGGL
EATTTLALGQVILNEARTYRSNLIQEPSAEAHAARPDALDEPQHAVMVCKKILHTFGIKPRAWRAGLPALLD
RYYRHV*
AnnotationID:2515GeneID:2507
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:03
Gene Name:
Confidence Code:3
GeneProduct:putative dTDP-4-rhamnose reductase-related protein
Cell Localization:()
Synonyms:PA4069
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:putative lipopolysaccharide biosynthesis protein
Functional Category Confidence Code:5
COGs:COG1091,pfam04321
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66128.1|AE016241_5 (AE016775) dTDP-4-rhamnose reductase-related protein [Pseudomonas
           putida KT2440]
          Length = 294

 Score =  491 bits (1263), Expect = e-138
 Identities = 237/293 (80%), Positives = 259/293 (88%)

>gb|AAO54219.1| (AE016858) lipopolysaccharide biosynthesis protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 292

 Score =  487 bits (1253), Expect = e-137
 Identities = 232/292 (79%), Positives = 260/292 (89%)








 
Structural Features:
COG1091, RfbD, dTDP-4-dehydrorhamnose reductase 
[Cell envelope biogenesis, outer membrane]
CD-Length = 281 residues, 100.0% aligned
Score =  236 bits (603), Expect = 3e-63
Identities = 85/290 (29%), Positives = 127/290 (43%), Gaps = 10/290 (3%)

pfam04321, RmlD_sub_bind, RmlD substrate binding domain. 
CD-Length = 139 residues, 100.0% aligned
Score =  109 bits (275), Expect = 3e-25
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 4/143 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5017




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22163




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36819




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2507_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2507
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4189
                           PA4069_tr
                           translation of PA4069
                           294
                           99.99
                           99.99
                           0
                           1539.0
     

     
     
123859
                           gb|AAG07456.1|AE004823_2
                           (AE004823) hypothetical protein PA4069 [Pseudomonas aeruginosa PAO1]
                           294
                           99.99
                           99.99
                           0
                           1539.0
     

     
     
123860
                           gb|AAN66128.1|AE016241_5
                           (AE016775) dTDP-4-rhamnose reductase-related protein [Pseudomonas putida KT2440]
                           294
                           80.61
                           88.09
                           0
                           1260.0
     

     
     
123861
                           gb|AAO54219.1|
                           (AE016858) lipopolysaccharide biosynthesis protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           294
                           78.91
                           88.43
                           2
                           1253.0
     

     






      

          
GC ORFID: 45509How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4069Glimmer Score: 

          
Start: 3975013Stop: 3974129

          
Length: 885


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4069 translation of PA4069Homolog Bit Score 597.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene71 (ORF: BLASTX 492.0), t_PA4069 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGAATGCGCCTGATGCTTTTGGGCGGCGGTAATGCCCTTGGACAGGCGCTGATCCGCCTAGGGGCGGAG 
GAAGACATCGGTTTCCTCGCGCCCAGACCACCCGAGCAGGGCTGGGATGCCGCCAGCCTCACCACCCTGCTG 
GACGAAACGCGCCCCGACGCGGTGATCAACCTCGCCTTCTACCACGACTGGTTCCAGGCCGAGCAGGTCGAG 
GCGGAGCGCCTGGGCGCCCAGGAGCGCGCCGTCGAGCGCCTCGCGGAACTCTGCCAGCACTACGAGATCCTG 
CTGGTCCAGCCGTCCAGCTACCGGGTCTTCGACGGCGCCCGCGCCACCGCCTACAGCGAGAAGGACGAGACC 
CTTCCGCTGGGCCTGCGTGGCCAGGCGCTCTGGCGCATGGAGCAGAGCGTGCGCGCGGCCTGCCCGCGACAT 
GTGCTGATCCGCTTCGGCTGGCTGCTGGACGAAAGCCCGAACGGCTTGCTGGGACGTTTCCTCAGCCGCGCC 
GAACAACCGCAGCCGCTGTTCCTCGCCGACGACCGGCGCGGCAACCCGACGCCGGTGGACGACGCCGCGCGG 
GTGGTGCTCTCTGTGCTCAAGCAGCTCGACTGCCAGGCGCCGCTGTGGGGCACCTACCACTACGGCGGACTG 
GAAGCGACCACCACCCTGGCGCTGGGACAGGTGATCCTCAACGAGGCGCGTACCTATCGCTCCAACCTGATC 
CAGGAGCCTTCGGCGGAGGCCCATGCCGCGCGCCCGGACGCGCTCGACGAGCCGCAGCACGCGGTGATGGTC 
TGCAAGAAGATCCTCCACACCTTCGGCATCAAGCCGCGCGCCTGGCGCGCAGGTTTGCCGGCTCTATTGGAC 
AGGTACTACAGGCATGTTTGA