ViewGene

Locus Name:
GeneID:
Location:

GeneID:2506
TrivialName: PA14_33050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33050
PAO1 Ortholog Locus:PA2441
Sequence Length:876
Protein Length:291
Start: 2893954
Stop: 2893079
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05829.1|AE004671_5 (AE004671) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 288/291 (98%), Positives = 288/291 (98%)
Sequence:
ATGAGCACGGCCTCTAGCCCATTCCCAAGGAGGCGCGACAGGCAGTCGCCCTCCGCCGGAAGACCGCCCGAA
CCACGGGAAGCGAACGCGCCGTCGCCCGCCACGCCGCAGCGACGCCGCTCTCAGGGATATGGCCAGCCCAGC
TGGCCCGGTATCAGCAAGGATCGTCCCATGACTGCAGACACCCCTACCTCTGTCGCTACCATCAACCACCTG
CTGCTCGGCGCGCCCTACACCAGCCCACTGGTGATCCCCGGTGACTGGCTGGTCGACGAACTGGAAGGCGCC
GTGGAAGTCGGCGGCTTCACCGACGGCCTGTTCCGCTGGCCGACGCGCAAGCGCAGCGGCCGCCCTTCGCCG
ATTCTCTGCGGCGACCTGCTGCGCGCGGTACGTACCGAATGCGCCGAGTCGGTGCAGTTCTGGTGGGGTTTC
AGTCCGAGCCTGGTGGGACGCTGGCGCCGCGCCCTCGGCGTGACCCGCCGCAACAATCCCGGCGACCAGGCG
GTGGCGCGCGCCCGCGCCGCCCTCGCCCGCTCGCTGGACCGCAAGGCGCCGCCGAAAGCACCGGCCGCCTGG
TCCAGCGAAGAGGTCGAGTTCATCCGCCGCCACGGCAGCAAGCGCAGCCTGGCCTGGTGCGCCTACATGCTC
GGCCGCAGCTACCAGAGTGTCGCCAGCAAGGCCGAGGAGCTTTCCCCGCACAGCCAGCGCGACCGCAACAAT
GCGATCTGGAGCAAGTCCGAGGAAGACCTGCTGCGCCAGCACTACCAGCAGCGCGGTTCGCTATGGTGCGCG
CAGCAGACCGGCAAGACCCGCGCGGCGGTATTCCACCGAGCCAAGAAGCTCGGCCTGCAACGGCAGCGGCCG
AAACACCCGTGA
Translation:
MSTASSPFPRRRDRQSPSAGRPPEPREANAPSPATPQRRRSQGYGQPSWPGISKDRPMTADTPTSVATINHL
LLGAPYTSPLVIPGDWLVDELEGAVEVGGFTDGLFRWPTRKRSGRPSPILCGDLLRAVRTECAESVQFWWGF
SPSLVGRWRRALGVTRRNNPGDQAVARARAALARSLDRKAPPKAPAAWSSEEVEFIRRHGSKRSLAWCAYML
GRSYQSVASKAEELSPHSQRDRNNAIWSKSEEDLLRQHYQQRGSLWCAQQTGKTRAAVFHRAKKLGLQRQRP
KHP*
AnnotationID:2514GeneID:2506
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:18
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2441
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:5015
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22161
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2506

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4188 PA2441_tr translation of PA2441 291 98.96 98.96 0 1538.0
123858 gb|AAG05829.1|AE004671_5 (AE004671) hypothetical protein PA2441 [Pseudomonas aeruginosa PAO1] 291 98.96 98.96 0 1538.0
GC ORFID: 45508How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2441Glimmer Score:
Start: 2059962Stop: 2060837
Length: 876
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2441 translation of PA2441Homolog Bit Score 597.0
Other Homologs: t_PA2441 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCACGGCCTCTAGCCCATTCCCAAGGAGGCGCGACAGGCAGTCGCCCTCCGCCGGAAGACCGCCCGAA
CCACGGGAAGCGAACGCGCCGTCGCCCGCCACGCCGCAGCGACGCCGCTCTCAGGGATATGGCCAGCCCAGC
TGGCCCGGTATCAGCAAGGATCGTCCCATGACTGCAGACACCCCTACCTCTGTCGCTACCATCAACCACCTG
CTGCTCGGCGCGCCCTACACCAGCCCACTGGTGATCCCCGGTGACTGGCTGGTCGACGAACTGGAAGGCGCC
GTGGAAGTCGGCGGCTTCACCGACGGCCTGTTCCGCTGGCCGACGCGCAAGCGCAGCGGCCGCCCTTCGCCG
ATTCTCTGCGGCGACCTGCTGCGCGCGGTACGTACCGAATGCGCCGAGTCGGTGCAGTTCTGGTGGGGTTTC
AGTCCGAGCCTGGTGGGACGCTGGCGCCGCGCCCTCGGCGTGACCCGCCGCAACAATCCCGGCGACCAGGCG
GTGGCGCGCGCCCGCGCCGCCCTCGCCCGCTCGCTGGACCGCAAGGCGCCGCCGAAAGCACCGGCCGCCTGG
TCCAGCGAAGAGGTCGAGTTCATCCGCCGCCACGGCAGCAAGCGCAGCCTGGCCTGGTGCGCCTACATGCTC
GGCCGCAGCTACCAGAGTGTCGCCAGCAAGGCCGAGGAGCTTTCCCCGCACAGCCAGCGCGACCGCAACAAT
GCGATCTGGAGCAAGTCCGAGGAAGACCTGCTGCGCCAGCACTACCAGCAGCGCGGTTCGCTATGGTGCGCG
CAGCAGACCGGCAAGACCCGCGCGGCGGTATTCCACCGAGCCAAGAAGCTCGGCCTGCAACGGCAGCGGCCG
AAACACCCGTGA