ViewGene
Locus Name:
GeneID:
Location:

GeneID:2502
TrivialName: PA14_61620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61620
PAO1 Ortholog Locus:PA4659
Sequence Length:900
Protein Length:299
Start: 5498935
Stop: 5499834
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08046.1|AE004880_2 (AE004880) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 298/299 (99%), Positives = 298/299 (99%)
Sequence:
ATGAACTCGCCCCACCTCGAACGCGGCGGCCTGCCGATCCGCGAAGTCACTCGTCTGACCGGCGTCCATCCG
GTCACCCTGCGCGCCTGGGAGCGCCGCTACGGCCTGGTGGTGCCGCAACGCACCGGCAAGGGTCACCGGCTC
TACAGCGAAGAGCAGGTCGAGCGCATCCGCCGGATACTCGTCTGGCTCGAGCGTGGCGTCGCCATCAGCCAG
GTGCGCGCGCTGCTGGAGCGTCCGGAGGAAACCCCGGCGGCGGATGTCGAATCCCCCTGGGAACGCCTGCAC
GAACAACTGCTGGACGCCATCGCCGCGCTGGCCGAGCGACGCCTCGACGATCTGTTCAACCAGGCCGCGTCG
CTCTATCCGGTAGCGACCCTCTGCGAAAAGCTTCTGCAACCCTTGCTGCAGCACCTCGAACGACGCTGGCAG
GGACAATTCGGCGCGCGCATGGAGCGGGCCTTCTTCTTCTCCTGGTTGCGCAGCAAGCTGGGCGCCCGCCTT
TATCACCAGCAGCGGCTGCAACAGGGCGCGCCGCTGCTGCTGGTCAACCAGTCCGAGCTGTCGCTGGAACCG
AACCTCTGGCTGTGCAGTTGGTTGCTCGGCAGCGGCGAGGTGCCGCTGCAGGTCTTCGACTGGCCGCTGCCA
CCGGCCGAACTGGCCCTGGCCTGCGAACGCCTGGAAGCTCGCGGCGTGTTGCTGTACGCCAGTCATCGCCTC
AACCCGGAGCACCTGCCGCGCCTGCTGGCAGGGGTTAGCTGCCCGGTGGTGCTGGTCGGACCGGCCGTGGAG
ATCCAGCGCGAAGCCTTCGAAACCCTGGCGCTAGCCGGCCTGCTGCTGGCGAGCACGCCCCTGGAAGCCCGC
CGCCTGCTCGGCGAACGAGGCCTGTTGAACCCATGA
Translation:
MNSPHLERGGLPIREVTRLTGVHPVTLRAWERRYGLVVPQRTGKGHRLYSEEQVERIRRILVWLERGVAISQ
VRALLERPEETPAADVESPWERLHEQLLDAIAALAERRLDDLFNQAASLYPVATLCEKLLQPLLQHLERRWQ
GQFGARMERAFFFSWLRSKLGARLYHQQRLQQGAPLLLVNQSELSLEPNLWLCSWLLGSGEVPLQVFDWPLP
PAELALACERLEARGVLLYASHRLNPEHLPRLLAGVSCPVVLVGPAVEIQREAFETLALAGLLLASTPLEAR
RLLGERGLLNP*
AnnotationID:2510GeneID:2502
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 06:06:41
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, MerR family
Cell Localization:()
Synonyms:PA4659
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01104,cd00592,COG0789
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54651.1| (AE016859) transcriptional regulator, MerR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 302

 Score =  340 bits (873), Expect = 5e-93
 Identities = 171/289 (59%), Positives = 214/289 (74%), Gaps = 3/289 (1%)

>gb|AAN66365.1|AE016264_9 (AE016776) transcriptional regulator, MerR family [Pseudomonas
           putida KT2440]
          Length = 299

 Score =  269 bits (688), Expect = 1e-71
 Identities = 136/281 (48%), Positives = 181/281 (64%), Gaps = 3/281 (1%)

>gb|AAO08406.1|AE016813_158 (AE016813) Transcriptional regulator, MerR family [Vibrio
           vulnificus CMCP6]
          Length = 267

 Score =  120 bits (301), Expect = 1e-26
 Identities = 61/129 (47%), Positives = 83/129 (64%)






 
Structural Features:
cd01104, HTH_MlrA, Helix-turn-helix transcription regulator MlrA 
(merR-like regulator A).
CD-Length = 98 residues,  93.9% aligned
Score = 81.1 bits (200), Expect = 1e-16

cd00592, HTH_MERR, Helix-turn-helix transcription regulator MERR, 
N-terminal domain.
CD-Length = 99 residues, 100.0% aligned
Score = 78.8 bits (194), Expect = 6e-16

COG0789, SoxR, Predicted transcriptional regulators [Transcription]
CD-Length = 124 residues,  98.4% aligned
Score = 73.2 bits (179), Expect = 4e-14
Identities = 34/122 (27%), Positives = 60/122 (49%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5007




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22153




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37593




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2502_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2502
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4184
                           PA4659_tr
                           translation of PA4659
                           299
                           99.66
                           99.66
                           0
                           1542.0
     

     
     
123813
                           gb|AAG08046.1|AE004880_2
                           (AE004880) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           299
                           99.66
                           99.66
                           0
                           1542.0
     

     
     
123814
                           gb|AAO54651.1|
                           (AE016859) transcriptional regulator, MerR family [Pseudomonas syringae pv. tomato str. DC3000]
                           308
                           55.84
                           70.12
                           15
                           875.0
     

     
     
123815
                           gb|AAN66365.1|AE016264_9
                           (AE016776) transcriptional regulator, MerR family [Pseudomonas putida KT2440]
                           306
                           46.07
                           61.43
                           14
                           686.0
     

     
     
123818
                           gb|AAN56383.1|AE015774_18
                           (AE015774) transcriptional regulator, MerR family [Shewanella oneidensis MR-1]
                           374
                           29.14
                           41.97
                           104
                           301.0
     

     






      

          
GC ORFID: 45504How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4659Glimmer Score: 

          
Start: 4762615Stop: 4763514

          
Length: 900


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4659 translation of PA4659Homolog Bit Score 598.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5082 (ORF: BLASTX 343.0), t_PA4659 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACTCGCCCCACCTCGAACGCGGCGGCCTGCCGATCCGCGAAGTCACTCGTCTGACCGGCGTCCATCCG 
GTCACCCTGCGCGCCTGGGAGCGCCGCTACGGCCTGGTGGTGCCGCAACGCACCGGCAAGGGTCACCGGCTC 
TACAGCGAAGAGCAGGTCGAGCGCATCCGCCGGATACTCGTCTGGCTCGAGCGTGGCGTCGCCATCAGCCAG 
GTGCGCGCGCTGCTGGAGCGTCCGGAGGAAACCCCGGCGGCGGATGTCGAATCCCCCTGGGAACGCCTGCAC 
GAACAACTGCTGGACGCCATCGCCGCGCTGGCCGAGCGACGCCTCGACGATCTGTTCAACCAGGCCGCGTCG 
CTCTATCCGGTAGCGACCCTCTGCGAAAAGCTTCTGCAACCCTTGCTGCAGCACCTCGAACGACGCTGGCAG 
GGACAATTCGGCGCGCGCATGGAGCGGGCCTTCTTCTTCTCCTGGTTGCGCAGCAAGCTGGGCGCCCGCCTT 
TATCACCAGCAGCGGCTGCAACAGGGCGCGCCGCTGCTGCTGGTCAACCAGTCCGAGCTGTCGCTGGAACCG 
AACCTCTGGCTGTGCAGTTGGTTGCTCGGCAGCGGCGAGGTGCCGCTGCAGGTCTTCGACTGGCCGCTGCCA 
CCGGCCGAACTGGCCCTGGCCTGCGAACGCCTGGAAGCTCGCGGCGTGTTGCTGTACGCCAGTCATCGCCTC 
AACCCGGAGCACCTGCCGCGCCTGCTGGCAGGGGTTAGCTGCCCGGTGGTGCTGGTCGGACCGGCCGTGGAG 
ATCCAGCGCGAAGCCTTCGAAACCCTGGCGCTAGCCGGCCTGCTGCTGGCGAGCACGCCCCTGGAAGCCCGC 
CGCCTGCTCGGCGAACGAGGCCTGTTGAACCCATGA