ViewGene
Locus Name:
GeneID:
Location:

GeneID:2501
TrivialName: PA14_15280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15280
PAO1 Ortholog Locus:PA3772
Sequence Length:897
Protein Length:298
Start: 1296317
Stop: 1295421
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07159.1|AE004796_4 (AE004796) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 291/298 (97%), Positives = 292/298 (97%)
Sequence:
ATGACCCACCGCACCGCCTCGATGGCCGTACCGACCGCCAGCGCCCTCGCGCTGCTCGGCATCCAGCTCCTG
CTGGGCGCCGAGGCCGGCGCCGCTGACCTCAACGCCCGCGACTTCTTCGGCGCCCCGGCGGGCACCACGCTC
GGCGTGCTCTACCTGCCGGCGACCCGCGCCCACGAGTTCCACGGGCCGGCCGATCGCAACGGCAAGGCCGAA
CTGAAGACCAACGCGGTGGCCTACCGCCAGGTGTTCTTCAGCGACATCTGCGGCACTCTCTGCACGCCGCAG
TTCATCATTCCCTTCGTCGACATCGATGCGCGCCTGCCCGGCAGCGCCGGGCATACCGGCGAGGCCGGTTTC
GGCGATCCCCAGGTCGGCGGCACCCTGTTCTTCATCAACGACCCGGAACGGCGCCGCTACAGCGGCCTGCTG
ACCCTGATCACCCTGCCGCTGGGCGAGTACCACGCGAAGAACCCCGATGTCTCGCCCGGCGCCAACCGCTGG
GGCGCCACCTTCGTCTACAACTACACCCAGGGCATCGGCCGCGACTGGGTGCTGGAAGCCAACCTGGAAGCG
CAGTTCTACGCGAAGAACGACGACTACTTCGGCAGCGACCTGGAGCAGAAACCGCTCTATCGCCTGCAGGCC
TTCGCCTCCTACGACTTCAGCCAGAGCACCTACGGCGCCCTCAAGCTGGTGCACGCCGATGGCGGCGAACTG
AAGCTGCAGGGCCATACCCTCGACGACACCCACCAGCGCTACACCCAACTCGGCTTCGAGCTAGGCCACTGG
CTGGACCGGCGCAACAGCCTGATGCTCGGTCTCTCGCGCAACGTCGCCACCGACAATGCGTTCCATGGCAGC
CAGGCCCTGTTGCGCCTGGTCCATGTGTTCTGA
Translation:
MTHRTASMAVPTASALALLGIQLLLGAEAGAADLNARDFFGAPAGTTLGVLYLPATRAHEFHGPADRNGKAE
LKTNAVAYRQVFFSDICGTLCTPQFIIPFVDIDARLPGSAGHTGEAGFGDPQVGGTLFFINDPERRRYSGLL
TLITLPLGEYHAKNPDVSPGANRWGATFVYNYTQGIGRDWVLEANLEAQFYAKNDDYFGSDLEQKPLYRLQA
FASYDFSQSTYGALKLVHADGGELKLQGHTLDDTHQRYTQLGFELGHWLDRRNSLMLGLSRNVATDNAFHGS
QALLRLVHVF*
AnnotationID:2509GeneID:2501
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 13:01:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3772
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5005




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22151




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31783




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:2501_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2501
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4183
                           PA3772_tr
                           translation of PA3772
                           298
                           97.65
                           97.98
                           0
                           1542.0
     

     
     
123812
                           gb|AAG07159.1|AE004796_4
                           (AE004796) hypothetical protein PA3772 [Pseudomonas aeruginosa PAO1]
                           298
                           97.65
                           97.98
                           0
                           1542.0
     

     






      

          
GC ORFID: 45503How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3772Glimmer Score: 

          
Start: 3657620Stop: 3658516

          
Length: 897


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3772 translation of PA3772Homolog Bit Score 598.0

          
Other Homologs:  t_PA3772 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCACCGCACCGCCTCGATGGCCGTACCGACCGCCAGCGCCCTCGCGCTGCTCGGCATCCAGCTCCTG 
CTGGGCGCCGAGGCCGGCGCCGCTGACCTCAACGCCCGCGACTTCTTCGGCGCCCCGGCGGGCACCACGCTC 
GGCGTGCTCTACCTGCCGGCGACCCGCGCCCACGAGTTCCACGGGCCGGCCGATCGCAACGGCAAGGCCGAA 
CTGAAGACCAACGCGGTGGCCTACCGCCAGGTGTTCTTCAGCGACATCTGCGGCACTCTCTGCACGCCGCAG 
TTCATCATTCCCTTCGTCGACATCGATGCGCGCCTGCCCGGCAGCGCCGGGCATACCGGCGAGGCCGGTTTC 
GGCGATCCCCAGGTCGGCGGCACCCTGTTCTTCATCAACGACCCGGAACGGCGCCGCTACAGCGGCCTGCTG 
ACCCTGATCACCCTGCCGCTGGGCGAGTACCACGCGAAGAACCCCGATGTCTCGCCCGGCGCCAACCGCTGG 
GGCGCCACCTTCGTCTACAACTACACCCAGGGCATCGGCCGCGACTGGGTGCTGGAAGCCAACCTGGAAGCG 
CAGTTCTACGCGAAGAACGACGACTACTTCGGCAGCGACCTGGAGCAGAAACCGCTCTATCGCCTGCAGGCC 
TTCGCCTCCTACGACTTCAGCCAGAGCACCTACGGCGCCCTCAAGCTGGTGCACGCCGATGGCGGCGAACTG 
AAGCTGCAGGGCCATACCCTCGACGACACCCACCAGCGCTACACCCAACTCGGCTTCGAGCTAGGCCACTGG 
CTGGACCGGCGCAACAGCCTGATGCTCGGTCTCTCGCGCAACGTCGCCACCGACAATGCGTTCCATGGCAGC 
CAGGCCCTGTTGCGCCTGGTCCATGTGTTCTGA