ViewGene
Locus Name:
GeneID:
Location:

GeneID:2500
TrivialName: PA14_34750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34750
PAO1 Ortholog Locus:PA2310
Sequence Length:888
Protein Length:295
Start: 3086373
Stop: 3087260
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05698.1|AE004657_5 (AE004657) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 293/295 (99%), Positives = 295/295 (100%)
Sequence:
ATGTCCGTTTCCCTTCCGGCGCCAGCGCGCGCCGACGTTCCCTTGCAGATCCGTGCCCTCGATGCCGCGTTC
GGCGCCGAGGTGCTCGGCCTCGACCTCGGGTTGCCCCTGGCCGCCGAGGACTTCCGCCGTATCCACCGGGCG
CACCTGGACCACCATGTGCTGGTGTTCCGCGAGCAGCGCATCACCCCGGCGCAGCAGATCGCCTTCAGCCGG
CGCTTCGGTGAGTTGCAGATCCATGTGCTGAAGCAGTTCCTGCTCCCAGGGCATCCGGAGATCCTCATCGTT
TCCAACATCGTCGAGAACGGCCAGCCCGTCGGTCTCGGCGATGCCGGCAAGTTCTGGCACTCCGACCTTTCC
TATAAGGAGCTGCCGAGCCTCGGCTCGATGCTGCATGCCCAGGAGCTGCCGGAGGAGGGCGGCGATACTCTG
TTCGCCGACATGCACAAGGCCTGGGACAGCCTGCCGGAGGCCCTGCGCAAGGCGATCGAGGGACGCACGGCG
GCGCATTCCTATACCGCCCGCTACAGCGAACCGCGCTTCGAGGGCAACTGGCGGCCGACCCTGAGCGCCGCC
CAGCTCGCCGAGGTGCGCGAAGTGGTCCATCCGATCGTGCGCACCCACCCGGAAAGCGGGCGCAAGGCGCTG
TTCGTCAGCGAAGGTTTCACCACCCGCATCCTCGGCCTGCCGGCCGACGAGAGCGCCCAACTGCTCGCCGAG
CTGTATGCGCACAGCGTGCGCCCCGAGCACATCTACCGGCATCGCTGGCAGGCGCATGACCTGGTGTTCTGG
GACAACCGCTCGCTGATCCATCTCGCTGGCGGTTGCCCGGCCCACCTGCGGCGCAAGCTCTACCGCACCACC
ATCCAGGGCGACGCGCCGTTCTGA
Translation:
MSVSLPAPARADVPLQIRALDAAFGAEVLGLDLGLPLAAEDFRRIHRAHLDHHVLVFREQRITPAQQIAFSR
RFGELQIHVLKQFLLPGHPEILIVSNIVENGQPVGLGDAGKFWHSDLSYKELPSLGSMLHAQELPEEGGDTL
FADMHKAWDSLPEALRKAIEGRTAAHSYTARYSEPRFEGNWRPTLSAAQLAEVREVVHPIVRTHPESGRKAL
FVSEGFTTRILGLPADESAQLLAELYAHSVRPEHIYRHRWQAHDLVFWDNRSLIHLAGGCPAHLRRKLYRTT
IQGDAPF*
AnnotationID:2508GeneID:2500
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:28
Gene Name:
Confidence Code:3
GeneProduct:putative taurine catabolism dioxygenase
Cell Localization:()
Synonyms:tauD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2175,pfam02668
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65802.1|AE016209_1 (AE016774) dioxygenase, TauD/TfdA family [Pseudomonas putida
           KT2440]
          Length = 299

 Score =  483 bits (1243), Expect = e-136
 Identities = 227/280 (81%), Positives = 255/280 (91%)

>emb|CAE35362.1| (BX640452) putative taurine catabolism dioxygenase [Bordetella
           bronchiseptica]
          Length = 307

 Score =  432 bits (1110), Expect = e-120
 Identities = 207/297 (69%), Positives = 246/297 (82%), Gaps = 3/297 (1%)

>gb|AAM40090.1| (AE012177) taurine dioxygenase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 300

 Score =  412 bits (1059), Expect = e-114
 Identities = 201/298 (67%), Positives = 232/298 (77%), Gaps = 6/298 (2%)






 
Structural Features:
COG2175, TauD, Probable taurine catabolism dioxygenase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 286 residues,  98.6% aligned
Score =  279 bits (716), Expect = 2e-76
Identities = 135/287 (47%), Positives = 171/287 (59%), Gaps = 7/287 (2%)

pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
CD-Length = 282 residues,  98.6% aligned
Score =  179 bits (454), Expect = 5e-46
Identities = 102/287 (35%), Positives = 140/287 (48%), Gaps = 15/287 (5%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5003




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22149




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32480




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2500_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2500
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4181
                           PA2310_tr
                           translation of PA2310
                           295
                           99.32
                           99.99
                           0
                           1543.0
     

     
     
123796
                           gb|AAG05698.1|AE004657_5
                           (AE004657) hypothetical protein PA2310 [Pseudomonas aeruginosa PAO1]
                           295
                           99.32
                           99.99
                           0
                           1543.0
     

     
     
123797
                           gb|AAN65802.1|AE016209_1
                           (AE016774) dioxygenase, TauD/TfdA family [Pseudomonas putida KT2440]
                           299
                           77.59
                           87.62
                           4
                           1246.0
     

     
     
123798
                           gb|AAO58624.1|
                           (AE016874) dioxygenase, TauD/TfdA family [Pseudomonas syringae pv. tomato str. DC3000]
                           304
                           73.68
                           81.90
                           15
                           1177.0
     

     
     
123799
                           emb|CAE35362.1|
                           (BX640452) putative taurine catabolism dioxygenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           307
                           67.42
                           80.13
                           12
                           1111.0
     

     






      

          
GC ORFID: 45502How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2310Glimmer Score: 

          
Start: 1867543Stop: 1866656

          
Length: 888


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2310 translation of PA2310Homolog Bit Score 598.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3248 (ORF: BLASTX 452.0), t_PA3935 (ORF: BLASTX 205.0), t_PA2310 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGTTTCCCTTCCGGCGCCAGCGCGCGCCGACGTTCCCTTGCAGATCCGTGCCCTCGATGCCGCGTTC 
GGCGCCGAGGTGCTCGGCCTCGACCTCGGGTTGCCCCTGGCCGCCGAGGACTTCCGCCGTATCCACCGGGCG 
CACCTGGACCACCATGTGCTGGTGTTCCGCGAGCAGCGCATCACCCCGGCGCAGCAGATCGCCTTCAGCCGG 
CGCTTCGGTGAGTTGCAGATCCATGTGCTGAAGCAGTTCCTGCTCCCAGGGCATCCGGAGATCCTCATCGTT 
TCCAACATCGTCGAGAACGGCCAGCCCGTCGGTCTCGGCGATGCCGGCAAGTTCTGGCACTCCGACCTTTCC 
TATAAGGAGCTGCCGAGCCTCGGCTCGATGCTGCATGCCCAGGAGCTGCCGGAGGAGGGCGGCGATACTCTG 
TTCGCCGACATGCACAAGGCCTGGGACAGCCTGCCGGAGGCCCTGCGCAAGGCGATCGAGGGACGCACGGCG 
GCGCATTCCTATACCGCCCGCTACAGCGAACCGCGCTTCGAGGGCAACTGGCGGCCGACCCTGAGCGCCGCC 
CAGCTCGCCGAGGTGCGCGAAGTGGTCCATCCGATCGTGCGCACCCACCCGGAAAGCGGGCGCAAGGCGCTG 
TTCGTCAGCGAAGGTTTCACCACCCGCATCCTCGGCCTGCCGGCCGACGAGAGCGCCCAACTGCTCGCCGAG 
CTGTATGCGCACAGCGTGCGCCCCGAGCACATCTACCGGCATCGCTGGCAGGCGCATGACCTGGTGTTCTGG 
GACAACCGCTCGCTGATCCATCTCGCTGGCGGTTGCCCGGCCCACCTGCGGCGCAAGCTCTACCGCACCACC 
ATCCAGGGCGACGCGCCGTTCTGA