ViewGene

Locus Name:
GeneID:
Location:

GeneID:250
TrivialName: PA14_16470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16470
PAO1 Ortholog Locus:PA3704
Sequence Length:2310
Protein Length:769
Start: 1409737
Stop: 1412046
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07091.1|AE004789_11 (AE004789) probable chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa PAO1]
Identities = 763/769 (99%), Positives = 764/769 (99%)
Sequence:
ATGACCCCGGACCAGATGAGAGACGCGTCGCTGCTCGAGCTGTTCCGGCTCGAGGCGGAGGCCCAGACCCAG
GTGCTCAACGCCGGCCTGATGGCGTTGGAGCGCAGCCCGACCCAGGCCGACCAACTGGAAGCCTGCATGCGC
GCCGCGCACTCGCTGAAAGGCGCGGCGCGGATCGTCGGGCTGGACGCCGGCGTGCGCGTGGCGCACGTCATG
GAGGATTGCCTGGTGGAGGCGCAGGACGGACGCCTGCTCCTGCAATCGGAACATATCGATGCGTTGCTCCAG
GGCTGCGACCTGTTGCTGCGTATCGGCACCCCGCCCGCCGGCGACGCAGGCTGGGCCGAAGACGCCGGGCGG
GAAGAGATCGACGGTCTGGTGCAGCGCCTCGAAGGCCTGGTGCGCAGCGGCCTGCCGCTGGCCCGCGCGGAG
CTGCCGGCGACGACTCCCGGCCTGCCGGAAGCGGCCCCCGAGGCGCCGCCAGCGGCGTCAGCGGCCGCCAGC
GACGACAACGACGAGGAGCCCGCCGGGCAGGCGGGCGGCGAACAGGCCGAGGAGCGCCGCAGCCGGGTCCTG
CGGGTCACCGCCGAGCGCCTGGACCGGCTGCTGGATATCTCCAGCAAGTCGCTGGTGGAGTTCCAGCGCATC
AAGCCGCTGGCCGATTCCCTGCAACGCCTGCGTCGCCTGCAGTCCAGCGCCAGCCGCGCGCTCGACGTGGTA
CGCGAGACGGTCCAGGAAACCGCCCTCGACCCGCAGGCCCAGGCCATGCTCGGCGAGGCGCGGCAACTGATC
GGCGAATGCCAGCAGATGCTGGTGCAGCACATCGCCGATCTCGACGAGTTCGCCTGGCAGGGCGGCCAGCGC
GCCCAGGTGCTCTACGACGCGGCGCTGGCCTCGCGGATGCGACCGTTCGCCGACGTCCTTAGCGGCCAGGCG
CGGATGGTTCGCGACCTGGGCCGCTCGCTGGGCAAGCAGGTGCGCCTGCTGGTCGAGGGCGAAAGCACCCAG
GTCGACCGGGATGTCCTGGAAAAACTCGAAGCGCCGCTCACCCACCTGCTGCGCAATGCCGTCGATCACGGT
ATCGAGGCGCCGGAAACCCGCCTCGCCGCCGGCAAGCCGGCCGAGGGCAGGATCACCATCCGCGCCCGCCAC
CACGCCGGCATGCTGGTCCTGGAACTGAGCGACGACGGCGGCGGCATCGATCTGCAGCGCCTGCGCGAGACC
GTGCTCAATCGCCAGTTCGCCACCGCCGAGACCGCGGCGCAATTGAGCGAGGAGGAACTCCTGGCGTTTCTC
TTCCTGCCCGGCTTCAGCATGCGCGAGCAGGTCACCGAGGTGTCCGGTCGCGGCGTCGGACTGGACGCCGTG
CAGCACATGGTCCGCCAGTTGCGTGGCGGCGTGCGCATGGAGCAACGCCAGGGGCAGGGCACGCTGTTCCAC
GTCGAGGTGCCGCTGACCCTGTCCGTGGTGCGCAGCCTGGTGGTGGAGATCGGCGAGGAGGCCTACGCCTTT
CCGCTGGCGCACATCGAGCGCATGTGCGAGCTGGAGGCGGAGGAGATCATCCAGCTCGAAGGGCGCCAGCAC
TTCTGGTACGAGGGTCGCCATGTCGGCCTGGTCTCGGCTGCGCAACTGCTGCAGCGGCCCGAGAGCAGCCGC
ACCGAAGGGGCTATCCCGGTAGTGGTAGTGCGCGACCGCGATGCGGTCTACGGCGTCGCCGTGGAGCGTTTC
GTCGGCGAGCGTACCCTGGTGGTGATGCCTCTCGATCCGCGCCTGGGCAAGGTGCGCGACGTTTCCGCCGGC
GCCTTGCTGGACGACGGTTCGCCGGTGCTGATCCTGGACGTCGAGGACCTCCTGCATTCGGTCGGCAAGTTG
CTCAGCAGCGGCCGCCTGGAGCGCATCGATCGCAGCCGGCGGCAGGCCGGCGGGGCGCAACGCAAGCGCATC
CTGGTGGTCGACGACTCGCTCACGGTGCGTGAGCTGGAACGCAAGCTCCTGCTCGGCCGCGGCTACGACGTG
GCAGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCTCGGAGCATTTCGACCTGCTCATCACCGAT
ATCGACATGCCGCGCATGGACGGTATCGAACTGGTCACCCTGGTGCGTCGCGACAGCCGCCTGCAGTCGCTG
CCGGTGATGGTGGTGTCCTACAAGGATCGTGAGGAGGACCGTCGGCGCGGTCTCGACGCCGGCGCCGACTAT
TATCTGGCGAAGGCCAGTTTCCACGATGAGGCCTTGCTGGATGCCGTCGTCGTCCTGATCGGAGAAGCACAG
GGTTGA
Translation:
MTPDQMRDASLLELFRLEAEAQTQVLNAGLMALERSPTQADQLEACMRAAHSLKGAARIVGLDAGVRVAHVM
EDCLVEAQDGRLLLQSEHIDALLQGCDLLLRIGTPPAGDAGWAEDAGREEIDGLVQRLEGLVRSGLPLARAE
LPATTPGLPEAAPEAPPAASAAASDDNDEEPAGQAGGEQAEERRSRVLRVTAERLDRLLDISSKSLVEFQRI
KPLADSLQRLRRLQSSASRALDVVRETVQETALDPQAQAMLGEARQLIGECQQMLVQHIADLDEFAWQGGQR
AQVLYDAALASRMRPFADVLSGQARMVRDLGRSLGKQVRLLVEGESTQVDRDVLEKLEAPLTHLLRNAVDHG
IEAPETRLAAGKPAEGRITIRARHHAGMLVLELSDDGGGIDLQRLRETVLNRQFATAETAAQLSEEELLAFL
FLPGFSMREQVTEVSGRGVGLDAVQHMVRQLRGGVRMEQRQGQGTLFHVEVPLTLSVVRSLVVEIGEEAYAF
PLAHIERMCELEAEEIIQLEGRQHFWYEGRHVGLVSAAQLLQRPESSRTEGAIPVVVVRDRDAVYGVAVERF
VGERTLVVMPLDPRLGKVRDVSAGALLDDGSPVLILDVEDLLHSVGKLLSSGRLERIDRSRRQAGGAQRKRI
LVVDDSLTVRELERKLLLGRGYDVAVAVDGMDGWNALRSEHFDLLITDIDMPRMDGIELVTLVRRDSRLQSL
PVMVVSYKDREEDRRRGLDAGADYYLAKASFHDEALLDAVVVLIGEAQG*
AnnotationID:260GeneID:250
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 14:02:55
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis sensor/effector fusion protein
Cell Localization:()
Synonyms:wspE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0643
Secondary Functional Category(ies):Chemotaxis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO92337.1| (AY074937) WspE [Pseudomonas fluorescens]
          Length = 755

 Score = 1040 bits (2688), Expect = 0.0
 Identities = 550/769 (71%), Positives = 626/769 (81%), Gaps = 16/769 (2%)

>gb|AAN67114.1|AE016340_5 (AE016779) sensor histidine kinase/response regulator [Pseudomonas
           putida KT2440]
          Length = 762

 Score = 1007 bits (2603), Expect = 0.0
 Identities = 531/769 (69%), Positives = 614/769 (79%), Gaps = 7/769 (0%)

>dbj|BAB54725.1| (AP003017) chemotaxis histidine kinase [Mesorhizobium loti]
          Length = 757

 Score =  725 bits (1871), Expect = 0.0
 Identities = 404/781 (51%), Positives = 524/781 (67%), Gaps = 40/781 (5%)
Structural Features:
COG0643, CheA, Chemotaxis protein histidine kinase and related kinases 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 716 residues,  99.9% aligned
Score =  480 bits (1238), Expect = 4e-136
Identities = 237/715 (33%), Positives = 329/715 (46%), Gaps = 90/715 (12%)
Genomic Context:
Comment:
ReferenceID:503
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17645
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31846
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:250_cdd.html
URL:
Homologs By Global Alignment
Gene ID:250

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
424 PA3704_tr translation of PA3704 769 99.21 99.34 0 3794.0
23330 gb|AAG07091.1|AE004789_11 (AE004789) probable chemotaxis sensor/effector fusion protein [Pseudomonas aeruginosa PAO1] 769 99.21 99.34 0 3794.0
23331 gb|AAO92337.1| (AY074937) WspE [Pseudomonas fluorescens] 770 71.42 81.29 16 2702.0
23332 gb|AAO55018.1| (AE016861) sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] 799 69.21 79.47 36 2670.0
23333 gb|AAN67114.1|AE016340_5 (AE016779) sensor histidine kinase/response regulator [Pseudomonas putida KT2440] 781 69.01 79.76 31 2622.0
GC ORFID: 43252How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3704Glimmer Score:
Start: 3544200Stop: 3541891
Length: 2310
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3704 translation of PA3704Homolog Bit Score 1466.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4585 (ORF: BLASTX 1035.0), t_PA3704 (ORF: GLIMMER)
GC ORF Sequence
ATGACCCCGGACCAGATGAGAGACGCGTCGCTGCTCGAGCTGTTCCGGCTCGAGGCGGAGGCCCAGACCCAG
GTGCTCAACGCCGGCCTGATGGCGTTGGAGCGCAGCCCGACCCAGGCCGACCAACTGGAAGCCTGCATGCGC
GCCGCGCACTCGCTGAAAGGCGCGGCGCGGATCGTCGGGCTGGACGCCGGCGTGCGCGTGGCGCACGTCATG
GAGGATTGCCTGGTGGAGGCGCAGGACGGACGCCTGCTCCTGCAATCGGAACATATCGATGCGTTGCTCCAG
GGCTGCGACCTGTTGCTGCGTATCGGCACCCCGCCCGCCGGCGACGCAGGCTGGGCCGAAGACGCCGGGCGG
GAAGAGATCGACGGTCTGGTGCAGCGCCTCGAAGGCCTGGTGCGCAGCGGCCTGCCGCTGGCCCGCGCGGAG
CTGCCGGCGACGACTCCCGGCCTGCCGGAAGCGGCCCCCGAGGCGCCGCCAGCGGCGTCAGCGGCCGCCAGC
GACGACAACGACGAGGAGCCCGCCGGGCAGGCGGGCGGCGAACAGGCCGAGGAGCGCCGCAGCCGGGTCCTG
CGGGTCACCGCCGAGCGCCTGGACCGGCTGCTGGATATCTCCAGCAAGTCGCTGGTGGAGTTCCAGCGCATC
AAGCCGCTGGCCGATTCCCTGCAACGCCTGCGTCGCCTGCAGTCCAGCGCCAGCCGCGCGCTCGACGTGGTA
CGCGAGACGGTCCAGGAAACCGCCCTCGACCCGCAGGCCCAGGCCATGCTCGGCGAGGCGCGGCAACTGATC
GGCGAATGCCAGCAGATGCTGGTGCAGCACATCGCCGATCTCGACGAGTTCGCCTGGCAGGGCGGCCAGCGC
GCCCAGGTGCTCTACGACGCGGCGCTGGCCTCGCGGATGCGACCGTTCGCCGACGTCCTTAGCGGCCAGGCG
CGGATGGTTCGCGACCTGGGCCGCTCGCTGGGCAAGCAGGTGCGCCTGCTGGTCGAGGGCGAAAGCACCCAG
GTCGACCGGGATGTCCTGGAAAAACTCGAAGCGCCGCTCACCCACCTGCTGCGCAATGCCGTCGATCACGGT
ATCGAGGCGCCGGAAACCCGCCTCGCCGCCGGCAAGCCGGCCGAGGGCAGGATCACCATCCGCGCCCGCCAC
CACGCCGGCATGCTGGTCCTGGAACTGAGCGACGACGGCGGCGGCATCGATCTGCAGCGCCTGCGCGAGACC
GTGCTCAATCGCCAGTTCGCCACCGCCGAGACCGCGGCGCAATTGAGCGAGGAGGAACTCCTGGCGTTTCTC
TTCCTGCCCGGCTTCAGCATGCGCGAGCAGGTCACCGAGGTGTCCGGTCGCGGCGTCGGACTGGACGCCGTG
CAGCACATGGTCCGCCAGTTGCGTGGCGGCGTGCGCATGGAGCAACGCCAGGGGCAGGGCACGCTGTTCCAC
GTCGAGGTGCCGCTGACCCTGTCCGTGGTGCGCAGCCTGGTGGTGGAGATCGGCGAGGAGGCCTACGCCTTT
CCGCTGGCGCACATCGAGCGCATGTGCGAGCTGGAGGCGGAGGAGATCATCCAGCTCGAAGGGCGCCAGCAC
TTCTGGTACGAGGGTCGCCATGTCGGCCTGGTCTCGGCTGCGCAACTGCTGCAGCGGCCCGAGAGCAGCCGC
ACCGAAGGGGCTATCCCGGTAGTGGTAGTGCGCGACCGCGATGCGGTCTACGGCGTCGCCGTGGAGCGTTTC
GTCGGCGAGCGTACCCTGGTGGTGATGCCTCTCGATCCGCGCCTGGGCAAGGTGCGCGACGTTTCCGCCGGC
GCCTTGCTGGACGACGGTTCGCCGGTGCTGATCCTGGACGTCGAGGACCTCCTGCATTCGGTCGGCAAGTTG
CTCAGCAGCGGCCGCCTGGAGCGCATCGATCGCAGCCGGCGGCAGGCCGGCGGGGCGCAACGCAAGCGCATC
CTGGTGGTCGACGACTCGCTCACGGTGCGTGAGCTGGAACGCAAGCTCCTGCTCGGCCGCGGCTACGACGTG
GCAGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCTCGGAGCATTTCGACCTGCTCATCACCGAT
ATCGACATGCCGCGCATGGACGGTATCGAACTGGTCACCCTGGTGCGTCGCGACAGCCGCCTGCAGTCGCTG
CCGGTGATGGTGGTGTCCTACAAGGATCGTGAGGAGGACCGTCGGCGCGGTCTCGACGCCGGCGCCGACTAT
TATCTGGCGAAGGCCAGTTTCCACGATGAGGCCTTGCTGGATGCCGTCGTCGTCCTGATCGGAGAAGCACAG
GGTTGA