ViewGene

Locus Name:
GeneID:
Location:

GeneID:25
TrivialName: PA14_39640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39640
PAO1 Ortholog Locus:PA1923
Sequence Length:3846
Protein Length:1281
Start: 3532880
Stop: 3529035
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05311.1|AE004618_5 (AE004618) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1271/1281 (99%), Positives = 1275/1281 (99%)
Sequence:
ATGCGCCGTTCGCTACTCTTCTGCGGCGCGCTGCTGGCCAGTCTCTGTGCCTGGGCGGAGCCGGCCCAGGTG
CGTCTGCTCAGCAGCGATTTCGTCCTCCCGGGCAAGCACCAGCGCCTAGCCGGTTGGGCGCGCGAGGCCGGT
GTCGAGTTGCGCGGCCTGCGCCTCGGCATCGGCGAGGCGCCGCCCGGCGACTGGCTGGACGGCGGCGACCTG
CTGATCCTCGACACACCGCGTCCGACCGATCGCGCCCAGGTCGAGCAGGCGCTGGGCGAGCGCTTGCAAGGC
GGGACGCAACCCTGGATCCGCGTCGGCGGTGGTCCGCCGGGTTTCGGCGACCTGCCGGCGGCGCTGGGCGGG
CGCCTGGTCGGCTACTACGCGAACGGCGGCGAAGCCAACCTGCGCCGGCTGTTCGAGGCGGTCCGACGCTGG
CATGCCGGCCTGCCCGTCGACGCGTTGCCGGCGCCGCAGCCCCTGGCGCAGGCCGGCTTCTATCATCCCGAC
GCACCGGCGCCGTTCGCCGGCCTCGCCGACTACCTGGCCTGGGGCGCCTCGCGCTGGGCCAGCGACGCCCCG
CGCATCGCCTTCCTGATCCCGCGCGGCGCCATCGCCGATGCCCAGACCGGCGCCATCGACGAACTGTTGCGG
CGTAGCGAGCGGCACGGCCAGGCGCCGCTGGCGGTGTGGTTCGACGACAGCGATCCGGAAGCGTTGAGGAAG
TCCTTCGCTGGCGCCGATGTCCAGGCGCTGGTCAACCTGCAGCACCTGCAGAACGGCCCGGCGCGCCGTGCC
GAGTTCCTCGCGCTGGACGTGCCGGTATTGCAGACCCTCGGCTACCGCGACGGCAACGAGGCCGACTGGCTG
GCCGCCGCCAGCGGGGTGGCGCCGCGTACCGCGGCGGCCTTCCTCGGCATGCCGGAAACCTGGGGAATGAGC
GATCCGCTGGTGATCAGCGCCCTGGAGAACGGCGAGCCGAAGCTGATGGCCGGGCAGGCCGAGGCCCTGCTG
GACAAGCTCGACCGGCTGCTGCGCCTGCGTCGCCTGCCGGCGGCGGACAAGCACCTGGCGCTGATGTTCTGG
AACCACCCGGAGGGCGAGAAGAACGTCGCCGCCTCGCATCTCAATGTACCGGCCAGCCTGGCCCGTCTCGGC
GAAGCGCTGCGGGCGGCCGGCTACCGGGTTGCGACGAGCGACGAAAGCGCGCTGATCGATACCGCCCAGCGC
CTGCTCGGCGGCTACTACCGGCCGCAGACCCTGGACGCGCTGTATCGCGACGGCCTCGCCGCGAGCCTGCCG
CTGGACGCCTACCTGCACTGGTTCGAGGCGCTGCCGGCGGATCTGCGCGAGGAGATGCGCGCGCGCTGGGGC
GACCCGCGTCGACATTGGGCCTTGCGCGATATCGACGGCCAGCGACGCTTCGTGTTCCCGGCGGCGCGCCTG
GGTAATCTGCTGCTGTTGCCGCAGCCGCCGCGCGCCGGCCGTCCGGGCGAGGCCTACCACGACAGCGCGGTG
CCGCCGGACCATCTCTACCTGGCGGTCTACCAGTTCGTCCGCGAGGGTTTCGGCGCCGACGCGCTGATCCAT
TTCGGCACCCATGGCACCCAGGAATGGCTACCCGGCAAGGACCGCGGGCTGGCGGTGGGCGACTACCCGCTG
CGGGCGCTCGGCGACCTGCCGGTGTTCTACCCGTACATCCAGGACAACGTTGGCGAGGCGATCCAGGCGCGC
CGGCGCGGGCGCGCGGTCACCGTCAGCCACCAGACGCCGTCGTTCGCCCCGGCCGGGCTGTACGACGAACTG
CGCGACCTGCACCAGTTGATCCACGAATACCAGCAACTGGACGAGGGCGCGGTGCGCGAACGCAGCGCCGAG
CAGATCCGCGCGGCGGTGCGGGCGGCGCACATGAACGACGACCTGGGCTGGAGCGAGGCAGCGATGCGCGAG
GATTTCCCGGCGTTCCTCGGCGTGCTCCACGACCACCTGCACCGACTGGCCGGCTCGGCGATGCCGCTGGGG
CTGCACACCTTCGGTGTCGCCGCCTCGCCGGAGCTGCGCCTGGGCACCGTCATGCAGCAGCTCGGCGAGCCC
TACTACCGCGCGCTCGGTCTCGACCCCGACGAACTGTTCGCCGCCGATTTCAGGGCGCTGCGGGAAGGTCGT
GCCTACCGCACGCTGCAACGCTACCTGCGCGACGGCGGCGAGATCGCCAAGGTGGCCGATCCGCGCCTGCGC
GAGCAGTTGCTGCGCGCCCGCGAACTGGACCGCCAGCTCGCCGACACCGGCGAACTGGAGGCGCTGCTCGCC
GGCCTCGCCGGGCGCTTCGTCGCGCCCGGGCCGGGCGGCGATCCGATCCGCAATCCACAGGTACCCAGCGGG
CGCAACCTGTTCGCCTTCGAGGCCGACAAGGTACCGACCCGCGCCGCCTACGAAGCCGGCGCCGAGGCCTTC
GGCCAACTGCTGGAAAGCTACCGCGCCGAGCACCAGGGCAGGGCGCCGGAAAAGCTCGCCTTCAGCCTCTGG
TCGTCGGAAACCATGCGCCACCTGGGCATCGTCGAAAGCCAGGCGCTGCACGCCCTCGGCCTGCGCCCGCGC
TGGGACGCCGGTGGCCGCCTGCTGGCGCTGGACATCGTGCCGGCGGCGGAACTGGGGCGTCCACGGGTGGAC
GTGGTGCTACAGGTGACCAGTGTCTACCGCGACCAGTTCGACGGCTTCATGCGCCTGCTCGCCGAGGCCATC
GAGCGCCTCGCCGCGCTGGACGAGCCGGGCAACCCGCTGGCGCGCAACAGCCAGGCGCTGGAGCGGCGCCTG
CGCGAACGCGGCGTCGAAGCGCCACTGGCGCAGCGCCTGTCGCGCCTGCGGCTGTTCGGCAATGCGCTGGGC
GACTACGGCACCGGGGTCACGCAACTGACCCTCGACTCCACCCGCTGGGACGACGACTCGGCGCTCGCCGAG
CAGTTCCTCGGGCGCTTGCAATACGCCTACGGCAGTCGCGACTGGGGCGTGAAGCTGGATGGCGGCAACCTG
TTCGCCGAACAGTTGAAGGGTGTACAGGCGGCGATCCTCTCGCGCTCCTCGACGCTCAACGGCGTGCTCTCC
ACCGACCACCCGTTCGAATACCTTGGCGGCCTGTCACTGGCGGTACGCCACCTCGACGGCGCCAGCCCGGCG
CTGTACATCGCCGACCTGCGCCAGCGCCAGCCGCGCACCGCGGCCGCCGCGCAGTTCCTCGCCAGCGAGCTG
CGCGGGCGCTACCTCAGCCCGCAGTGGATCGCCGCGATGCAGCGCGAGGGCTACGCCGGCAGCCTGGAAATG
CTCGACCTGGCCAACAACCTGTGGGGCTGGCAGGCGGCGGATCGCACCATGGTCCGCGCCGACCAGTGGCAG
GCGTTGCACGACACCTTCGTCATGGACCGCCGCGAGCTGGGTCTCGCCGAGTGGTTCGAAACGCACAATCCG
ACCGCCCAGGCGCAGATCATCGCGCGCATGGCCGAGGCCATCCGCAAGGGCTACTGGGACGCCAGCGAGCAG
ACCCGCCGCGAACTGGCCGAGCGCTGGCGGCAACTGGCGGCCGCCGGCGCCGGCGAGGTCGGCGCGGCGACC
ACCCGTGAATTCATCGAACGGATGGCCGGCGGTTTCGGCGAGGCCGCGGCGCAGGCAGAGGGCGCGGCCGCG
TCCGGTGCCGGCGAAACGGTCAGCGGCCGCGTCCTCGAAGAAGTCGCGCCGCCGCCGTCCGGCGAGCCGCAG
CCGTGGCTCCGGCTGGCCGCCGCCGTGCTGCTCGCGCTGTTCGCCGCCGGCGCCGTCCGGCAATCCGTAGTC
AATCGTCGTCCGATGGAAAATCGCTCATGA
Translation:
MRRSLLFCGALLASLCAWAEPAQVRLLSSDFVLPGKHQRLAGWAREAGVELRGLRLGIGEAPPGDWLDGGDL
LILDTPRPTDRAQVEQALGERLQGGTQPWIRVGGGPPGFGDLPAALGGRLVGYYANGGEANLRRLFEAVRRW
HAGLPVDALPAPQPLAQAGFYHPDAPAPFAGLADYLAWGASRWASDAPRIAFLIPRGAIADAQTGAIDELLR
RSERHGQAPLAVWFDDSDPEALRKSFAGADVQALVNLQHLQNGPARRAEFLALDVPVLQTLGYRDGNEADWL
AAASGVAPRTAAAFLGMPETWGMSDPLVISALENGEPKLMAGQAEALLDKLDRLLRLRRLPAADKHLALMFW
NHPEGEKNVAASHLNVPASLARLGEALRAAGYRVATSDESALIDTAQRLLGGYYRPQTLDALYRDGLAASLP
LDAYLHWFEALPADLREEMRARWGDPRRHWALRDIDGQRRFVFPAARLGNLLLLPQPPRAGRPGEAYHDSAV
PPDHLYLAVYQFVREGFGADALIHFGTHGTQEWLPGKDRGLAVGDYPLRALGDLPVFYPYIQDNVGEAIQAR
RRGRAVTVSHQTPSFAPAGLYDELRDLHQLIHEYQQLDEGAVRERSAEQIRAAVRAAHMNDDLGWSEAAMRE
DFPAFLGVLHDHLHRLAGSAMPLGLHTFGVAASPELRLGTVMQQLGEPYYRALGLDPDELFAADFRALREGR
AYRTLQRYLRDGGEIAKVADPRLREQLLRARELDRQLADTGELEALLAGLAGRFVAPGPGGDPIRNPQVPSG
RNLFAFEADKVPTRAAYEAGAEAFGQLLESYRAEHQGRAPEKLAFSLWSSETMRHLGIVESQALHALGLRPR
WDAGGRLLALDIVPAAELGRPRVDVVLQVTSVYRDQFDGFMRLLAEAIERLAALDEPGNPLARNSQALERRL
RERGVEAPLAQRLSRLRLFGNALGDYGTGVTQLTLDSTRWDDDSALAEQFLGRLQYAYGSRDWGVKLDGGNL
FAEQLKGVQAAILSRSSTLNGVLSTDHPFEYLGGLSLAVRHLDGASPALYIADLRQRQPRTAAAAQFLASEL
RGRYLSPQWIAAMQREGYAGSLEMLDLANNLWGWQAADRTMVRADQWQALHDTFVMDRRELGLAEWFETHNP
TAQAQIIARMAEAIRKGYWDASEQTRRELAERWRQLAAAGAGEVGAATTREFIERMAGGFGEAAAQAEGAAA
SGAGETVSGRVLEEVAPPPSGEPQPWLRLAAAVLLALFAAGAVRQSVVNRRPMENRS*
AnnotationID:35GeneID:25
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:38
Gene Name:
Confidence Code:3
GeneProduct:putative CobN/Magnesium chelatase
Cell Localization:()
Synonyms:PA1923
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02514
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD84668.1| (BX321858) CobN/magnesium chelatase [Nitrosomonas europaea ATCC
            19718]
          Length = 1399

 Score =  841 bits (2173), Expect = 0.0
 Identities = 452/1035 (43%), Positives = 619/1035 (59%), Gaps = 30/1035 (2%)

>gb|AAM31298.1| (AE013394) Cobalamin biosynthesis protein CobN [Methanosarcina mazei
            Goe1]
          Length = 1490

 Score =  564 bits (1453), Expect = e-159
 Identities = 367/1119 (32%), Positives = 578/1119 (51%), Gaps = 67/1119 (5%)
Structural Features:
pfam02514, CobN-Mg_chel, CobN/Magnesium Chelatase.
CD-Length = 946 residues, 100.0% aligned
Score =  621 bits (1604), Expect = 1e-178
Identities = 337/972 (34%), Positives = 480/972 (49%), Gaps = 76/972 (7%)
Genomic Context:
Comment:
ReferenceID:53
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17195
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37022
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:25_cdd.html
URL:
Homologs By Global Alignment
Gene ID:25

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
52 PA1923_tr translation of PA1923 1281 99.21 99.53 0 6592.0
11007 gb|AAG05311.1|AE004618_5 (AE004618) hypothetical protein PA1923 [Pseudomonas aeruginosa PAO1] 1281 99.21 99.53 0 6592.0
11008 emb|CAE27840.1| (BX572600) CobN/Magnesium chelatase family [Rhodopseudomonas palustris CGA009] 1304 54.75 68.17 27 3630.0
11009 emb|CAD84668.1| (BX321858) CobN/magnesium chelatase [Nitrosomonas europaea ATCC 19718] 1418 38.71 53.24 156 2437.0
GC ORFID: 43027How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1923Glimmer Score:
Start: 1421031Stop: 1424876
Length: 3846
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1923 translation of PA1923Homolog Bit Score 2543.0
Other Homologs: t_PA1923 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCGTTCGCTACTCTTCTGCGGCGCGCTGCTGGCCAGTCTCTGTGCCTGGGCGGAGCCGGCCCAGGTG
CGTCTGCTCAGCAGCGATTTCGTCCTCCCGGGCAAGCACCAGCGCCTAGCCGGTTGGGCGCGCGAGGCCGGT
GTCGAGTTGCGCGGCCTGCGCCTCGGCATCGGCGAGGCGCCGCCCGGCGACTGGCTGGACGGCGGCGACCTG
CTGATCCTCGACACACCGCGTCCGACCGATCGCGCCCAGGTCGAGCAGGCGCTGGGCGAGCGCTTGCAAGGC
GGGACGCAACCCTGGATCCGCGTCGGCGGTGGTCCGCCGGGTTTCGGCGACCTGCCGGCGGCGCTGGGCGGG
CGCCTGGTCGGCTACTACGCGAACGGCGGCGAAGCCAACCTGCGCCGGCTGTTCGAGGCGGTCCGACGCTGG
CATGCCGGCCTGCCCGTCGACGCGTTGCCGGCGCCGCAGCCCCTGGCGCAGGCCGGCTTCTATCATCCCGAC
GCACCGGCGCCGTTCGCCGGCCTCGCCGACTACCTGGCCTGGGGCGCCTCGCGCTGGGCCAGCGACGCCCCG
CGCATCGCCTTCCTGATCCCGCGCGGCGCCATCGCCGATGCCCAGACCGGCGCCATCGACGAACTGTTGCGG
CGTAGCGAGCGGCACGGCCAGGCGCCGCTGGCGGTGTGGTTCGACGACAGCGATCCGGAAGCGTTGAGGAAG
TCCTTCGCTGGCGCCGATGTCCAGGCGCTGGTCAACCTGCAGCACCTGCAGAACGGCCCGGCGCGCCGTGCC
GAGTTCCTCGCGCTGGACGTGCCGGTATTGCAGACCCTCGGCTACCGCGACGGCAACGAGGCCGACTGGCTG
GCCGCCGCCAGCGGGGTGGCGCCGCGTACCGCGGCGGCCTTCCTCGGCATGCCGGAAACCTGGGGAATGAGC
GATCCGCTGGTGATCAGCGCCCTGGAGAACGGCGAGCCGAAGCTGATGGCCGGGCAGGCCGAGGCCCTGCTG
GACAAGCTCGACCGGCTGCTGCGCCTGCGTCGCCTGCCGGCGGCGGACAAGCACCTGGCGCTGATGTTCTGG
AACCACCCGGAGGGCGAGAAGAACGTCGCCGCCTCGCATCTCAATGTACCGGCCAGCCTGGCCCGTCTCGGC
GAAGCGCTGCGGGCGGCCGGCTACCGGGTTGCGACGAGCGACGAAAGCGCGCTGATCGATACCGCCCAGCGC
CTGCTCGGCGGCTACTACCGGCCGCAGACCCTGGACGCGCTGTATCGCGACGGCCTCGCCGCGAGCCTGCCG
CTGGACGCCTACCTGCACTGGTTCGAGGCGCTGCCGGCGGATCTGCGCGAGGAGATGCGCGCGCGCTGGGGC
GACCCGCGTCGACATTGGGCCTTGCGCGATATCGACGGCCAGCGACGCTTCGTGTTCCCGGCGGCGCGCCTG
GGTAATCTGCTGCTGTTGCCGCAGCCGCCGCGCGCCGGCCGTCCGGGCGAGGCCTACCACGACAGCGCGGTG
CCGCCGGACCATCTCTACCTGGCGGTCTACCAGTTCGTCCGCGAGGGTTTCGGCGCCGACGCGCTGATCCAT
TTCGGCACCCATGGCACCCAGGAATGGCTACCCGGCAAGGACCGCGGGCTGGCGGTGGGCGACTACCCGCTG
CGGGCGCTCGGCGACCTGCCGGTGTTCTACCCGTACATCCAGGACAACGTTGGCGAGGCGATCCAGGCGCGC
CGGCGCGGGCGCGCGGTCACCGTCAGCCACCAGACGCCGTCGTTCGCCCCGGCCGGGCTGTACGACGAACTG
CGCGACCTGCACCAGTTGATCCACGAATACCAGCAACTGGACGAGGGCGCGGTGCGCGAACGCAGCGCCGAG
CAGATCCGCGCGGCGGTGCGGGCGGCGCACATGAACGACGACCTGGGCTGGAGCGAGGCAGCGATGCGCGAG
GATTTCCCGGCGTTCCTCGGCGTGCTCCACGACCACCTGCACCGACTGGCCGGCTCGGCGATGCCGCTGGGG
CTGCACACCTTCGGTGTCGCCGCCTCGCCGGAGCTGCGCCTGGGCACCGTCATGCAGCAGCTCGGCGAGCCC
TACTACCGCGCGCTCGGTCTCGACCCCGACGAACTGTTCGCCGCCGATTTCAGGGCGCTGCGGGAAGGTCGT
GCCTACCGCACGCTGCAACGCTACCTGCGCGACGGCGGCGAGATCGCCAAGGTGGCCGATCCGCGCCTGCGC
GAGCAGTTGCTGCGCGCCCGCGAACTGGACCGCCAGCTCGCCGACACCGGCGAACTGGAGGCGCTGCTCGCC
GGCCTCGCCGGGCGCTTCGTCGCGCCCGGGCCGGGCGGCGATCCGATCCGCAATCCACAGGTACCCAGCGGG
CGCAACCTGTTCGCCTTCGAGGCCGACAAGGTACCGACCCGCGCCGCCTACGAAGCCGGCGCCGAGGCCTTC
GGCCAACTGCTGGAAAGCTACCGCGCCGAGCACCAGGGCAGGGCGCCGGAAAAGCTCGCCTTCAGCCTCTGG
TCGTCGGAAACCATGCGCCACCTGGGCATCGTCGAAAGCCAGGCGCTGCACGCCCTCGGCCTGCGCCCGCGC
TGGGACGCCGGTGGCCGCCTGCTGGCGCTGGACATCGTGCCGGCGGCGGAACTGGGGCGTCCACGGGTGGAC
GTGGTGCTACAGGTGACCAGTGTCTACCGCGACCAGTTCGACGGCTTCATGCGCCTGCTCGCCGAGGCCATC
GAGCGCCTCGCCGCGCTGGACGAGCCGGGCAACCCGCTGGCGCGCAACAGCCAGGCGCTGGAGCGGCGCCTG
CGCGAACGCGGCGTCGAAGCGCCACTGGCGCAGCGCCTGTCGCGCCTGCGGCTGTTCGGCAATGCGCTGGGC
GACTACGGCACCGGGGTCACGCAACTGACCCTCGACTCCACCCGCTGGGACGACGACTCGGCGCTCGCCGAG
CAGTTCCTCGGGCGCTTGCAATACGCCTACGGCAGTCGCGACTGGGGCGTGAAGCTGGATGGCGGCAACCTG
TTCGCCGAACAGTTGAAGGGTGTACAGGCGGCGATCCTCTCGCGCTCCTCGACGCTCAACGGCGTGCTCTCC
ACCGACCACCCGTTCGAATACCTTGGCGGCCTGTCACTGGCGGTACGCCACCTCGACGGCGCCAGCCCGGCG
CTGTACATCGCCGACCTGCGCCAGCGCCAGCCGCGCACCGCGGCCGCCGCGCAGTTCCTCGCCAGCGAGCTG
CGCGGGCGCTACCTCAGCCCGCAGTGGATCGCCGCGATGCAGCGCGAGGGCTACGCCGGCAGCCTGGAAATG
CTCGACCTGGCCAACAACCTGTGGGGCTGGCAGGCGGCGGATCGCACCATGGTCCGCGCCGACCAGTGGCAG
GCGTTGCACGACACCTTCGTCATGGACCGCCGCGAGCTGGGTCTCGCCGAGTGGTTCGAAACGCACAATCCG
ACCGCCCAGGCGCAGATCATCGCGCGCATGGCCGAGGCCATCCGCAAGGGCTACTGGGACGCCAGCGAGCAG
ACCCGCCGCGAACTGGCCGAGCGCTGGCGGCAACTGGCGGCCGCCGGCGCCGGCGAGGTCGGCGCGGCGACC
ACCCGTGAATTCATCGAACGGATGGCCGGCGGTTTCGGCGAGGCCGCGGCGCAGGCAGAGGGCGCGGCCGCG
TCCGGTGCCGGCGAAACGGTCAGCGGCCGCGTCCTCGAAGAAGTCGCGCCGCCGCCGTCCGGCGAGCCGCAG
CCGTGGCTCCGGCTGGCCGCCGCCGTGCTGCTCGCGCTGTTCGCCGCCGGCGCCGTCCGGCAATCCGTAGTC
AATCGTCGTCCGATGGAAAATCGCTCATGA