ViewGene
Locus Name:
GeneID:
Location:

GeneID:2499
TrivialName: PA14_43760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43760
PAO1 Ortholog Locus:PA1604
Sequence Length:906
Protein Length:301
Start: 3895910
Stop: 3896815
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04993.1|AE004588_6 (AE004588) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 297/301 (98%), Positives = 299/301 (99%)
Sequence:
ATGGCATTCCTCCTGATAGGCCTGAGTGAACATAGACCGCAGCCGCTCGGCCAGGGTTCGCCGCTCCGCTGG
CTGGCCCTGCTGTTCGGCCTGCTGGCCTGGCATGCCGGGGCTGGCGAACGGGTGATCTATCCGCGCCATTCC
GAAGGGCGCAACCCCGAACCCTACGTCGTCGAGCTGCTGCAACTGGCGCTGGCCAGGAGCGGCGGCGACTAC
CGCCTGGAGCCCAGCGCGCAGCCCATGCCGCAGTCCCGTGCGCAACTGCGCCTGGAGCAGGACGATCCGGGC
CTGCAGGTGATGTGGGCGCAGTCCCGCGACGACCTGGAAGAGACCCTGCTGCCGATCCGCATTCCGATCTAT
CGCGGCCTGATCGGCTGGCGCATTCCCCTGGTCAGCGCCGCCAACAAGGACCTCCTGGCCTCGGTGCGGACC
CTCGACGATCTCCGCCGCCTGCGCTTCGGCCAGCGCCAGGACTGGGCCGACACACCGATCCTGCGCGCCAAC
GGCCTGGAGGTGAAGACCAGCCAGAGCTACGAGAGCCTGTTCCGCATGCTCGATGCCGGCCGCTTCGAGGTC
TTCCCCCGCGAGGTCGTAGTGATCGACGGAGAACTGGAGGACGCCTCCCGCGCCGGGCTGCACCTGGCGATC
GACCAGCACCTGGCCCTGCACTACCCCGCGGCCTTCTATTTCTTCGTTTCGCGTCAACGCCCGGAACTGGCC
GAGGCCATTCGCCAGGGCCTGGAGAAGGCGATTGCCGACGGTAGCTTCGAACGGCTGTTCGAGCGACATTTC
AAGACGCGGCTGGAAAAGCTTGCCCTTCGGCAGCGGAGAATAATCGAGCTgaAAAAcCCCtATCTTCCAGGA
AAAACTCCTTTTCAGCGCGAGGCACTCTGGTACCGGCCGTGA
Translation:
MAFLLIGLSEHRPQPLGQGSPLRWLALLFGLLAWHAGAGERVIYPRHSEGRNPEPYVVELLQLALARSGGDY
RLEPSAQPMPQSRAQLRLEQDDPGLQVMWAQSRDDLEETLLPIRIPIYRGLIGWRIPLVSAANKDLLASVRT
LDDLRRLRFGQRQDWADTPILRANGLEVKTSQSYESLFRMLDAGRFEVFPREVVVIDGELEDASRAGLHLAI
DQHLALHYPAAFYFFVSRQRPELAEAIRQGLEKAIADGSFERLFERHFKTRLEKLALRQRRIIELKNPYLPG
KTPFQREALWYRP*
AnnotationID:2507GeneID:2499
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 17:05:57
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1604
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5001




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22147




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37247




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2499_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2499
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4180
                           PA1604_tr
                           translation of PA1604
                           301
                           98.67
                           99.33
                           0
                           1543.0
     

     
     
123794
                           gb|AAG04993.1|AE004588_6
                           (AE004588) hypothetical protein PA1604 [Pseudomonas aeruginosa PAO1]
                           301
                           98.67
                           99.33
                           0
                           1543.0
     

     
     
123795
                           gb|AAQ58794.1|
                           (AE016913) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           303
                           42.57
                           54.78
                           24
                           560.0
     

     






      

          
GC ORFID: 45501How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1604Glimmer Score: 

          
Start: 1057999Stop: 1057094

          
Length: 906


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1604 translation of PA1604Homolog Bit Score 598.0

          
Other Homologs:  t_PA1604 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCATTCCTCCTGATAGGCCTGAGTGAACATAGACCGCAGCCGCTCGGCCAGGGTTCGCCGCTCCGCTGG 
CTGGCCCTGCTGTTCGGCCTGCTGGCCTGGCATGCCGGGGCTGGCGAACGGGTGATCTATCCGCGCCATTCC 
GAAGGGCGCAACCCCGAACCCTACGTCGTCGAGCTGCTGCAACTGGCGCTGGCCAGGAGCGGCGGCGACTAC 
CGCCTGGAGCCCAGCGCGCAGCCCATGCCGCAGTCCCGTGCGCAACTGCGCCTGGAGCAGGACGATCCGGGC 
CTGCAGGTGATGTGGGCGCAGTCCCGCGACGACCTGGAAGAGACCCTGCTGCCGATCCGCATTCCGATCTAT 
CGCGGCCTGATCGGCTGGCGCATTCCCCTGGTCAGCGCCGCCAACAAGGACCTCCTGGCCTCGGTGCGGACC 
CTCGACGATCTCCGCCGCCTGCGCTTCGGCCAGCGCCAGGACTGGGCCGACACACCGATCCTGCGCGCCAAC 
GGCCTGGAGGTGAAGACCAGCCAGAGCTACGAGAGCCTGTTCCGCATGCTCGATGCCGGCCGCTTCGAGGTC 
TTCCCCCGCGAGGTCGTAGTGATCGACGGAGAACTGGAGGACGCCTCCCGCGCCGGGCTGCACCTGGCGATC 
GACCAGCACCTGGCCCTGCACTACCCCGCGGCCTTCTATTTCTTCGTTTCGCGTCAACGCCCGGAACTGGCC 
GAGGCCATTCGCCAGGGCCTGGAGAAGGCGATTGCCGACGGTAGCTTCGAACGGCTGTTCGAGCGACATTTC 
AAGACGCGGCTGGAAAAGCTTGCCCTTCGGCAGCGGAGAATAATCGAGCTgaAAAAcCCCtATCTTCCAGGA 
AAAACTCCTTTTCAGCGCGAGGCACTCTGGTACCGGCCGTGA