ViewGene
Locus Name:
GeneID:
Location:

GeneID:2498
TrivialName: PA14_55280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55280
PAO1 Ortholog Locus:PA0699
Sequence Length:945
Protein Length:314
Start: 4909066
Stop: 4908122
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04088.1|AE004505_9 (AE004505) probable peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas aeruginosa PAO1]
Identities = 313/314 (99%), Positives = 314/314 (100%)
Sequence:
ATGCGGCCGGCATTTCGTTGCGGCATCCTGGCGTTCGCGCTTGCCGTTCTCGCCGGCTGTGGCCAGCGCGAG
GACGGCGGCGCGGGCCAGGCTCAGGCCGCGCTTGCCAAGCCATCTGCCAGCGCCGCCGCGGAACCCGCGGTG
GCCCGCCTCGGTGCCTTGCAGGTGGCGCCGGACGAACTGAAGGCGCTGCTGGCCGAGGTGCCGGCGGAAACC
CGCGCGCAGTTGAGCGAGAACCGCGACGCGCTGGAACGCTGGATGCGTGCGCGACTGGCCGAGAAGGCGCTC
TACGAACAGGCCAGCGCCCAGGACTGGCAACAGCGTCCGCAGGTCAAGACGCTGATCGATGCGGCGGCGCGG
CAGATCGTCCTGCGTACCTACCTGGAGTCGGTGAGCACGGTGCCCGAGGACTACCCCAGCGATGCCGAACTG
CAGGCCGCCTACCAGGCGAACAAGGCGCAACTGGCTGTACCGGCGCTGTACCGGGTCAGCCAGATCTTCATC
GCCGCCTCTGCGGCCGGCGGGCTTGCCGAAGCGCGCAAGCGCGCCCAGGAACTCTACCGGCAGGCCGCGGAC
GGCGACTTCGCCGAACTGGCGCGCAAGCATTCCGACGACCCGCAGACCGCCCGCAACGGCGGCGACATCGGT
GGGTTGCTGGCGCAGGCGCAACTGCTGCCGGCGATCCGTCCGGCGCTGGAACGGCTGAAGGTCGGCGCGGTG
TCCGAGCCGATCCAGGGCGCCAACGGCTTCCACCTGGTCAAGCTGACCGAGCGTCGCGACGCCCGCCTCGCC
ACCCTCGACGAGGTCCGTGGTCGCCTGCGCGAAAGCCTGCGCGCGCAACGCCAGGAGCAGATCGCCAAGGCC
TACCTGGATGGCCTGGTGAACAACGCTACCCTGAGCATCGACGGCGCGTTGCTCGGCAAGACCCTGGCGGAA
CTGCACTGA
Translation:
MRPAFRCGILAFALAVLAGCGQREDGGAGQAQAALAKPSASAAAEPAVARLGALQVAPDELKALLAEVPAET
RAQLSENRDALERWMRARLAEKALYEQASAQDWQQRPQVKTLIDAAARQIVLRTYLESVSTVPEDYPSDAEL
QAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADGDFAELARKHSDDPQTARNGGDIG
GLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIAKA
YLDGLVNNATLSIDGALLGKTLAELH*
AnnotationID:2506GeneID:2498
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 17:05:50
Gene Name:
Confidence Code:3
GeneProduct:probable peptidyl-prolyl cis-trans isomerase, PpiC
Cell Localization:()
Synonyms:PA0699
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Translation, post-translational modification, degradation.
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase 
[Posttranslational modification, protein turnover, chaperones]
  CD-Length = 320 residues, only  67.8% aligned
  Score = 52.4 bits (124), Expect = 1e-07







   
Genomic Context:






   
Comment:


















    ReferenceID:4999




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22145




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2498
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4179
                           PA0699_tr
                           translation of PA0699
                           314
                           99.68
                           99.99
                           0
                           1542.0
     

     
     
123793
                           gb|AAG04088.1|AE004505_9
                           (AE004505) probable peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas aeruginosa PAO1]
                           314
                           99.68
                           99.99
                           0
                           1542.0
     

     






      

          
GC ORFID: 45500How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0699Glimmer Score: 

          
Start: 44841Stop: 45785

          
Length: 945


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0699 translation of PA0699Homolog Bit Score 598.0

          
Other Homologs:  t_PA0699 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGCCGGCATTTCGTTGCGGCATCCTGGCGTTCGCGCTTGCCGTTCTCGCCGGCTGTGGCCAGCGCGAG 
GACGGCGGCGCGGGCCAGGCTCAGGCCGCGCTTGCCAAGCCATCTGCCAGCGCCGCCGCGGAACCCGCGGTG 
GCCCGCCTCGGTGCCTTGCAGGTGGCGCCGGACGAACTGAAGGCGCTGCTGGCCGAGGTGCCGGCGGAAACC 
CGCGCGCAGTTGAGCGAGAACCGCGACGCGCTGGAACGCTGGATGCGTGCGCGACTGGCCGAGAAGGCGCTC 
TACGAACAGGCCAGCGCCCAGGACTGGCAACAGCGTCCGCAGGTCAAGACGCTGATCGATGCGGCGGCGCGG 
CAGATCGTCCTGCGTACCTACCTGGAGTCGGTGAGCACGGTGCCCGAGGACTACCCCAGCGATGCCGAACTG 
CAGGCCGCCTACCAGGCGAACAAGGCGCAACTGGCTGTACCGGCGCTGTACCGGGTCAGCCAGATCTTCATC 
GCCGCCTCTGCGGCCGGCGGGCTTGCCGAAGCGCGCAAGCGCGCCCAGGAACTCTACCGGCAGGCCGCGGAC 
GGCGACTTCGCCGAACTGGCGCGCAAGCATTCCGACGACCCGCAGACCGCCCGCAACGGCGGCGACATCGGT 
GGGTTGCTGGCGCAGGCGCAACTGCTGCCGGCGATCCGTCCGGCGCTGGAACGGCTGAAGGTCGGCGCGGTG 
TCCGAGCCGATCCAGGGCGCCAACGGCTTCCACCTGGTCAAGCTGACCGAGCGTCGCGACGCCCGCCTCGCC 
ACCCTCGACGAGGTCCGTGGTCGCCTGCGCGAAAGCCTGCGCGCGCAACGCCAGGAGCAGATCGCCAAGGCC 
TACCTGGATGGCCTGGTGAACAACGCTACCCTGAGCATCGACGGCGCGTTGCTCGGCAAGACCCTGGCGGAA 
CTGCACTGA