ViewGene
Locus Name:
GeneID:
Location:

GeneID:2496
TrivialName: PA14_13490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13490
PAO1 Ortholog Locus:PA3897
Sequence Length:903
Protein Length:300
Start: 1159481
Stop: 1160383
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07284.1|AE004807_3 (AE004807) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 299/300 (99%), Positives = 300/300 (100%)
Sequence:
ATGAATCTTTCGCTGTACCTGCTCACCGTGCTCATCTGGGGCACCACCTGGATCGCCATCAAGCTGCAGATG
GGCCCGGTGGCGATCACCCTGTCGATCGCCTACCGCTTCGCCCTGGCGGCGCTGGTGCTGTTCGCCGTGCTG
CTGCTCGGCCGCCGCCTGCAAAGGCTGGACGCACGGGGCCAACGCCTGTGCATGGCCCAGGGCGTATGCCTG
TTCTGCCTGAATTTCATCTGCTTCTATACCGCCAGCCAGTGGATTCCCAGCGGCCTGGTGGCCGTGGTGTTC
TCCACCGCCACCCTGTGGAATGCGCTGAACGCCCGCCTGTGGTTCGGCCAGCGCATCGCGTCGAACGTGATG
GCCGGTGGCGGTCTCGGCCTGCTCGGCCTGGGGCTGCTGTTCTGGCCGGAACTGGTGGGTCACCAGGCCACC
CCGGAAACCTTCTACGGCCTCGGCCTGGCCCTGCTAGGCACGCTGTGTTTCTCCACCGGCAACATGCTTTCC
AGCCTGCAACAGAAGGCCGGCATCCGCCCGCTCACCGGCAATGCCTGGAGCATGCTCTATGGCACCCTGATC
CTCCTGGCGCTGTGCCTGTTCCAGGGCGTGCCGCTGAATTTCGACTGGAGCGCGCGCTACGTCGGCTCGCTG
CTGTACCTGGCGATCCCCGGCTCGGTGATCGGCTTCACCGCCTATCTGACCCTGGTCGGGCGCATGGGCCCG
GATCGCGCCGCCTACTGCACCGTGCTGTTCCCGGTGGTGGCGCTGAACATCTCGGCCTTCGCCGAGGGCTAC
CGCTGGACCGCACCGGCGCTGGCCGGGCTGGTCCTGGTGATGCTCGGCAACGTCTTGGTGTTCCGCAAGCCG
AAGGCGCCGGCGCTGGCCGGGCCGGCGCGCTCGACCTAG
Translation:
MNLSLYLLTVLIWGTTWIAIKLQMGPVAITLSIAYRFALAALVLFAVLLLGRRLQRLDARGQRLCMAQGVCL
FCLNFICFYTASQWIPSGLVAVVFSTATLWNALNARLWFGQRIASNVMAGGGLGLLGLGLLFWPELVGHQAT
PETFYGLGLALLGTLCFSTGNMLSSLQQKAGIRPLTGNAWSMLYGTLILLALCLFQGVPLNFDWSARYVGSL
LYLAIPGSVIGFTAYLTLVGRMGPDRAAYCTVLFPVVALNISAFAEGYRWTAPALAGLVLVMLGNVLVFRKP
KAPALAGPARST*
AnnotationID:2504GeneID:2496
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 20:08:37
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3897
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70177.1|AE016657_2 (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 300

 Score =  461 bits (1187), Expect = e-129
 Identities = 219/295 (74%), Positives = 255/295 (86%)

>gb|AAO54741.1| (AE016860) membrane protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 300

 Score =  453 bits (1165), Expect = e-127
 Identities = 220/293 (75%), Positives = 247/293 (84%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4995




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22141




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31669




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2496_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2496
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4177
                           PA3897_tr
                           translation of PA3897
                           300
                           99.66
                           99.99
                           0
                           1544.0
     

     
     
123752
                           gb|AAG07284.1|AE004807_3
                           (AE004807) hypothetical protein PA3897 [Pseudomonas aeruginosa PAO1]
                           300
                           99.66
                           99.99
                           0
                           1544.0
     

     
     
123754
                           gb|AAO54741.1|
                           (AE016860) membrane protein [Pseudomonas syringae pv. tomato str. DC3000]
                           302
                           73.50
                           82.11
                           4
                           1160.0
     

     
     
123753
                           gb|AAN70177.1|AE016657_2
                           (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
                           300
                           73.00
                           85.33
                           0
                           1182.0
     

     
     
123755
                           emb|CAE44052.1|
                           (BX640422) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           300
                           72.00
                           80.33
                           4
                           1091.0
     

     






      

          
GC ORFID: 45498How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3897Glimmer Score: 

          
Start: 3794457Stop: 3793555

          
Length: 903


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3897 translation of PA3897Homolog Bit Score 599.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4363 (ORF: BLASTX 454.0), t_PA3897 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCTTTCGCTGTACCTGCTCACCGTGCTCATCTGGGGCACCACCTGGATCGCCATCAAGCTGCAGATG 
GGCCCGGTGGCGATCACCCTGTCGATCGCCTACCGCTTCGCCCTGGCGGCGCTGGTGCTGTTCGCCGTGCTG 
CTGCTCGGCCGCCGCCTGCAAAGGCTGGACGCACGGGGCCAACGCCTGTGCATGGCCCAGGGCGTATGCCTG 
TTCTGCCTGAATTTCATCTGCTTCTATACCGCCAGCCAGTGGATTCCCAGCGGCCTGGTGGCCGTGGTGTTC 
TCCACCGCCACCCTGTGGAATGCGCTGAACGCCCGCCTGTGGTTCGGCCAGCGCATCGCGTCGAACGTGATG 
GCCGGTGGCGGTCTCGGCCTGCTCGGCCTGGGGCTGCTGTTCTGGCCGGAACTGGTGGGTCACCAGGCCACC 
CCGGAAACCTTCTACGGCCTCGGCCTGGCCCTGCTAGGCACGCTGTGTTTCTCCACCGGCAACATGCTTTCC 
AGCCTGCAACAGAAGGCCGGCATCCGCCCGCTCACCGGCAATGCCTGGAGCATGCTCTATGGCACCCTGATC 
CTCCTGGCGCTGTGCCTGTTCCAGGGCGTGCCGCTGAATTTCGACTGGAGCGCGCGCTACGTCGGCTCGCTG 
CTGTACCTGGCGATCCCCGGCTCGGTGATCGGCTTCACCGCCTATCTGACCCTGGTCGGGCGCATGGGCCCG 
GATCGCGCCGCCTACTGCACCGTGCTGTTCCCGGTGGTGGCGCTGAACATCTCGGCCTTCGCCGAGGGCTAC 
CGCTGGACCGCACCGGCGCTGGCCGGGCTGGTCCTGGTGATGCTCGGCAACGTCTTGGTGTTCCGCAAGCCG 
AAGGCGCCGGCGCTGGCCGGGCCGGCGCGCTCGACCTAG