ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2492

TrivialName: PA14_33710

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_33710

PAO1 Ortholog Locus: PA2395

Sequence Length: 855

Protein Length: 284

Start: 2992486

Stop: 2991632

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05783.1|AE004665_10 (AE004665) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 281/284 (98%), Positives = 282/284 (99%)

Sequence:

ATGCACGCATTATCGCCCCTGGCCCTGGCCGCACTGATCGTCACCACCGCCCCCGCCTTCGCCGACGAAGCG
AAGAAGCCCGGCACAGTGTTCAAGGATTGCAAGGACTGCCCGGAGATGGTCGTGCTGCCCGCCGGCAGCTTC
ACCATGGGCACCCCGGACGACGAGGTCGGCCGCCAGCCCGACGAGGGCCCGCTGCACGACGTGACCTTCGCC
AAGCCGTTCGCCATCAGCCGCTACCAGGTCACCGCCGGCGAACTGGACGCCTACCTGAAGGCCACCGGCGTC
AAGCTGGCCGACGGCGATACCCGCCCCGGCCGCGAATGCATCGCCGGCAAGCCGCGCTACCAGCAAGGCCCT
CGCCAGCCGGCGGTATGCGTCGACTACAACGACGTGAAGAACTACGCCGCCTGGCTGTCAAAGAAGACCGGC
AAACACTACCGCATGCTCAGCGAGGCCGAGCGCGAGTACGGCGCCCGCGCCGGCAGCGCCGGCCCCTTCCCC
TTCCCGTTCGACGAAGGCAAGGAATACAGCATCGCCAAGCACGCCAACACCTACGGCGCCAGCGATGGCTAC
AACTTCACCTCGCCGGTGGGCAGCTTCCCGCCCAACGCCTTCGGCGTCTACGACATGCACGGCAACGTCTAC
GAGTGGGTCGCCGATTGCTGGCACGACCACTACAACGGCGCGCCGAGCGACGGCAGCGCGTGGATGGAGGAC
AAGTGCGAGCTGGTGCAGATCCGCGGCAACGACTGGGGCGAGCCGCCGATCTTCTCGCGCTCGGGCAACCGC
AACAATGCGGCCCCCAGCGACCGCGGCGACTGGATCGGCTTCCGCGTGGCGCGCGAACTCTGA

Translation:

MHALSPLALAALIVTTAPAFADEAKKPGTVFKDCKDCPEMVVLPAGSFTMGTPDDEVGRQPDEGPLHDVTFA
KPFAISRYQVTAGELDAYLKATGVKLADGDTRPGRECIAGKPRYQQGPRQPAVCVDYNDVKNYAAWLSKKTG
KHYRMLSEAEREYGARAGSAGPFPFPFDEGKEYSIAKHANTYGASDGYNFTSPVGSFPPNAFGVYDMHGNVY
EWVADCWHDHYNGAPSDGSAWMEDKCELVQIRGNDWGEPPIFSRSGNRNNAAPSDRGDWIGFRVAREL*

AnnotationID:2500 GeneID:2492

AnnotatorUID: danlee

Modification Date/Time: 2006-01-27 13:01:36

Gene Name: pvdO

Confidence Code: 1

GeneProduct: PvdO

Cell Localization: ()

Synonyms: PA2395

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (1) Adaptation, protection

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam03781, COG1262

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Pyoverdine synthesis

Homology:

Structural Features:

pfam03781, DUF323, Domain of unknown function (DUF323). This presumed domain is found in bacterial proteins. 
In some cases these proteins also contain a protein kinase domain. The function of this domain is unknown..
             CD-Length = 257 residues, 100.0% aligned
             Score =  217 bits (553), Expect = 1e-57

COG1262, Uncharacterized conserved protein [Function unknown].
             CD-Length = 314 residues,  95.9% aligned
             Score =  199 bits (507), Expect = 3e-52

Genomic Context:

Comment:

ReferenceID:4987

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:22133

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32945

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 2492_cdd.html

URL:

ReferenceID:38269

Author/Investigator(s): Ochsner UA, Wilderman PJ, Vasil AI, Vasil ML.

Title: GeneChip expression analysis of the iron starvation response in Pseudomonas aeruginosa: identification of novel pyoverdine biosynthesis genes.

PubMed: 12207696

MedLine:

Source:

Mol Microbiol. 2002 Sep;45(5):1277-87.

Reference Type: Journal

Data:

URL:

Homologs By Global Alignment

Gene ID:2492

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

4173 PA2395_tr translation of PA2395 284 98.94 99.29 0 1545.0

123614 gb|AAG05783.1|AE004665_10 (AE004665) hypothetical protein PA2395 [Pseudomonas aeruginosa PAO1] 284 98.94 99.29 0 1545.0

123615 gb|AAO17436.1| (AF540993) PA2395 [Pseudomonas aeruginosa] 284 98.59 98.59 0 1539.0

123616 gb|AAO17425.1| (AF540992) PA2395 [Pseudomonas aeruginosa] 284 98.59 98.59 0 1539.0

123618 gb|AAO55671.1| (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 287 67.24 77.00 8 1056.0

GC ORFID: `45494`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2395`	Glimmer Score:
Start: `1961430`	Stop: `1962284`
Length: `855`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2395 translation of PA2395`	Homolog Bit Score `599.0`
Other Homologs: `psyr_15may02_Scaffold1_revised_gene466 (ORF: BLASTX 417.0), t_PA2395 (ORF: GLIMMER)`
GC ORF Sequence
ATGCACGCATTATCGCCCCTGGCCCTGGCCGCACTGATCGTCACCACCGCCCCCGCCTTCGCCGACGAAGCG AAGAAGCCCGGCACAGTGTTCAAGGATTGCAAGGACTGCCCGGAGATGGTCGTGCTGCCCGCCGGCAGCTTC ACCATGGGCACCCCGGACGACGAGGTCGGCCGCCAGCCCGACGAGGGCCCGCTGCACGACGTGACCTTCGCC AAGCCGTTCGCCATCAGCCGCTACCAGGTCACCGCCGGCGAACTGGACGCCTACCTGAAGGCCACCGGCGTC AAGCTGGCCGACGGCGATACCCGCCCCGGCCGCGAATGCATCGCCGGCAAGCCGCGCTACCAGCAAGGCCCT CGCCAGCCGGCGGTATGCGTCGACTACAACGACGTGAAGAACTACGCCGCCTGGCTGTCAAAGAAGACCGGC AAACACTACCGCATGCTCAGCGAGGCCGAGCGCGAGTACGGCGCCCGCGCCGGCAGCGCCGGCCCCTTCCCC TTCCCGTTCGACGAAGGCAAGGAATACAGCATCGCCAAGCACGCCAACACCTACGGCGCCAGCGATGGCTAC AACTTCACCTCGCCGGTGGGCAGCTTCCCGCCCAACGCCTTCGGCGTCTACGACATGCACGGCAACGTCTAC GAGTGGGTCGCCGATTGCTGGCACGACCACTACAACGGCGCGCCGAGCGACGGCAGCGCGTGGATGGAGGAC AAGTGCGAGCTGGTGCAGATCCGCGGCAACGACTGGGGCGAGCCGCCGATCTTCTCGCGCTCGGGCAACCGC AACAATGCGGCCCCCAGCGACCGCGGCGACTGGATCGGCTTCCGCGTGGCGCGCGAACTCTGA