ViewGene
Locus Name:
GeneID:
Location:

GeneID:2490
TrivialName: PA14_07340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07340
PAO1 Ortholog Locus:PA0564
Sequence Length:912
Protein Length:303
Start: 631552
Stop: 630641
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03953.1|AE004492_12 (AE004492) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 301/303 (99%), Positives = 301/303 (99%)
Sequence:
ATGGACCCACTCGACCGGCTCATCCAGCTCGCCAACCTGCAGGGCCGCCTCGACCAGCGCTGCCAGCTACAG
GGCAGCTGGGCGCTGGAGCACCCGCAAGCGGTGCCCGGCGAGGCGACCTTCCATATCGTCATGGCCGGCACC
TGCTATTGCGAATTCCTCGATGGCGCTCGCCTCGACCTGCATCCCGGCGACCTGATCCTGTTGCCACGCGGC
ACCCCGCACCTCCTGCGCAGCGACAGCCCGGCGCAACCCTGCGAACCCACCGTGGAGCACCGCGGCAGCATC
CCGCTGTACCAGTTGAACGGCCCCGGCGAGGCCCTCGACATGCTTTGCGGCAGCTACCGCTATCACGCCGGT
GCCAGCCTGTTCGGCGCGCTCCCCGAGCGCCTGCTGGTGCATATGGACGAGTCGACCCAGCAGCCCCTGCGC
GCGCTGATCGGGTTGATGCGCGAGGAAGCCGAGAGCACCCGCAGCGGCGCCCGCTCGATCATCGACGCGCTG
GCCACCGCGCTGTTCGCCCTGGCCCTGCGCGCCTACCTGGACCGCCAACCGCTGGGCGACGGCCTGTTCGGC
CTGCTGGGCGACGCCCGCCTGGGACGAGCCCTGCGGGCCATGCTGGAACGCCCGGAGCATGCCTGGACCCTG
GAACAGCTTGCCCAGCAGGCGGCGATGTCGCGGGCCAGTTTCGTCCGCGCCTTCTCCGCCCTCGGCGGGACC
TCGCCGTGGATCCTGCTGACCCGCATCCGCATGGAAAAGGCCCGCGGCCTGCTGCGACAAACGCAGAAGAGC
CTGCTGGATATCGCCGCCGAGACCGGCTACCAGTCGGAGGCGGCGTTTTCCCGCAATTTCCGCCAGGCCTTC
GGCGAATCGCCGGGCCGTTTCCGCCGCCAGGCCGACTCCGCTCGCTGA
Translation:
MDPLDRLIQLANLQGRLDQRCQLQGSWALEHPQAVPGEATFHIVMAGTCYCEFLDGARLDLHPGDLILLPRG
TPHLLRSDSPAQPCEPTVEHRGSIPLYQLNGPGEALDMLCGSYRYHAGASLFGALPERLLVHMDESTQQPLR
ALIGLMREEAESTRSGARSIIDALATALFALALRAYLDRQPLGDGLFGLLGDARLGRALRAMLERPEHAWTL
EQLAQQAAMSRASFVRAFSALGGTSPWILLTRIRMEKARGLLRQTQKSLLDIAAETGYQSEAAFSRNFRQAF
GESPGRFRRQADSAR*
AnnotationID:2498GeneID:2490
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 07:07:45
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0564
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  98.8% aligned
Score = 91.8 bits (228), Expect = 9e-20
Identities = 33/83 (39%), Positives = 46/83 (55%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4983




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22129




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33852




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2490_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2490
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4171
                           PA0564_tr
                           translation of PA0564
                           303
                           99.33
                           99.33
                           0
                           1548.0
     

     
     
123606
                           gb|AAG03953.1|AE004492_12
                           (AE004492) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           303
                           99.33
                           99.33
                           0
                           1548.0
     

     






      

          
GC ORFID: 45492How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0564Glimmer Score: 

          
Start: 6432894Stop: 6431983

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0564 translation of PA0564Homolog Bit Score 600.0

          
Other Homologs:  t_PA0564 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACCCACTCGACCGGCTCATCCAGCTCGCCAACCTGCAGGGCCGCCTCGACCAGCGCTGCCAGCTACAG 
GGCAGCTGGGCGCTGGAGCACCCGCAAGCGGTGCCCGGCGAGGCGACCTTCCATATCGTCATGGCCGGCACC 
TGCTATTGCGAATTCCTCGATGGCGCTCGCCTCGACCTGCATCCCGGCGACCTGATCCTGTTGCCACGCGGC 
ACCCCGCACCTCCTGCGCAGCGACAGCCCGGCGCAACCCTGCGAACCCACCGTGGAGCACCGCGGCAGCATC 
CCGCTGTACCAGTTGAACGGCCCCGGCGAGGCCCTCGACATGCTTTGCGGCAGCTACCGCTATCACGCCGGT 
GCCAGCCTGTTCGGCGCGCTCCCCGAGCGCCTGCTGGTGCATATGGACGAGTCGACCCAGCAGCCCCTGCGC 
GCGCTGATCGGGTTGATGCGCGAGGAAGCCGAGAGCACCCGCAGCGGCGCCCGCTCGATCATCGACGCGCTG 
GCCACCGCGCTGTTCGCCCTGGCCCTGCGCGCCTACCTGGACCGCCAACCGCTGGGCGACGGCCTGTTCGGC 
CTGCTGGGCGACGCCCGCCTGGGACGAGCCCTGCGGGCCATGCTGGAACGCCCGGAGCATGCCTGGACCCTG 
GAACAGCTTGCCCAGCAGGCGGCGATGTCGCGGGCCAGTTTCGTCCGCGCCTTCTCCGCCCTCGGCGGGACC 
TCGCCGTGGATCCTGCTGACCCGCATCCGCATGGAAAAGGCCCGCGGCCTGCTGCGACAAACGCAGAAGAGC 
CTGCTGGATATCGCCGCCGAGACCGGCTACCAGTCGGAGGCGGCGTTTTCCCGCAATTTCCGCCAGGCCTTC 
GGCGAATCGCCGGGCCGTTTCCGCCGCCAGGCCGACTCCGCTCGCTGA