ViewGene

Locus Name:
GeneID:
Location:

GeneID: 249

TrivialName: PA14_47140

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_47140

PAO1 Ortholog Locus: PA1322

Sequence Length: 2199

Protein Length: 732

Start: 4201467

Stop: 4199269

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04711.1|AE004561_7 (AE004561) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1] Identities = 730/732 (99%), Positives = 730/732 (99%)

Sequence:

ATGGATCGTCGCAACGAGCCGTCCCCCTTGCCCACCAAACGCCCGCTGGCGCCGCTGATGCTGCTGATGGCC
GCCTGCTCCTCGCCGGCCCTGGCCGAGGACGCGGCGCGCAAGGACGATCCCCTGGAACTGGGAGCCGACACG
GTCACCGGCGAGCAGGCCTCGTCCAGGGTCGAACGCTCGGCCTCGGCCAAGTACGCCGTGCCGCTGCTGGAT
ACCCCGCAGACCGTCACGGTGGTGCCGCAAAAGGTAATCCAGGAGCAGAACGCCCTGAGCCTGCGCCAGGTG
CTGTCCAACGTCTCCGGCATCACCTTCAACGCCGGCGAAGGCGGCGGCGGTTCCGGCGACAGCATCAACATC
CGCGGCTTCAGCGCCAACGCCAACATGCAGGTGGACGGGCTGCGCGACAGCGCCCAGACCAGCCGCAGCGAC
CTGTTCAACCTGGAGGCGGTGGAAGTGATCAAGGGACCGAACTCGGTGTTCGGCGGCGCCGGCACCAGCGGC
GGCAGCATCAACATGGTCAGCAAGCAGCCCAAGGCCGAAGCCTTCACCCACCTGGGCGCCGGGCTGGGCACG
GACCGCTACCGGCGCCTGACCCTGGACACCAACCAGCCGCTGGAAGGGCTCGGCGAGTCGACCGCCTTCCGC
CTCAACCTCATGGCCCACCACAACGATGTCGCCGGGCGCGAACAGATCGACAAGCAGCGCTGGGGCATCGCG
CCATCCCTGACCTTCGGCCTGGACACCCCGACCCGCCTGACCCTGAGCTACTTCCACCAACGCGACGACAAC
CTTCCCGACTATGGCGTGCCGGCGCTGAACGGGCGCAAGCTGGACGGCGTCAGCCGCCACGATTATTTCGGC
TGGCGCAACCTGGACGAGGAGCGGATCGACAACGACGTCGCCACCCTCAAGCTCGAACACGATTTCAGCGAC
GACTTCCAGTTGCAGAACCTCATCCGCTATTCCCACCTGCATCGGGACACGGTGATCTCCGCCTCCCACGTC
AACCAGAAGGGCCTGCCGCCGGGGCGCTACCTGCCGGCGGGACCGCAAGCCTACGGGCGCGATTCGAAGACG
CGGATGTGGATCAACCAGACCAACCTCACCGGCCGCTTCGACACCTTCGGCCTGGCGCATACGCTGATCGGC
GGCTTCGAGCTGTCCCGCGAGACCTACGACCGCACCACCTACTCCTACAACCTGGGCAAGTTCTACCCGGCC
AACGGCTTCGACCTGCACAACCCGCCGGGCTACTGGAACGGCCCCACCGACAAGCGCGACAGCGCGCGCAAC
CGGACCGAACTGGAGGTCAAGGCGCTGTACGCCTTCGACACCATCGCCCTGGACGAGCGCTGGGACCTCAGC
CTGGGCCTGCGCTACGACTGGATCGACGGCACCTCGCGGAGCACGCCCTCAGGCAAGCCGACGGTGCGCGCC
GACAGTTCCGACGGCAAGCTGAGCACACGGGCGGGGCTGGTATTCAAGCCGCTGGAGAACGGGCGGGTGTAC
GTCTCCTACGGCACCTCCTTCAACCCCTCGGCGGAACACCTGGTCACCACCGGCTCGGGCGTGACCGAGGCG
ACCGGAGGCCTGGCGCCGGAGAAGAACAGCACCTACGAGCTGGGCACCAAGTGGGAGTTCCTCGGACGGCGC
CTGGAGCTGGACGCGGCGCTGTTCCAGGTGAAGAAGGAAGACGCCCGCGAACGCCTGGCCGACGGCAGCTAC
GTGCTTGCCGGCGAACAGCGCGTGCGTGGCCTGGAGCTGAGCGCCAGCGGCAAGCTGAACGAGCACTGGGAC
CTCTTCGCCACCTACACCTACCTCGACAGCGAAACCCTGAAATCCAGTAACACGCAGCGTGAGGGACAGGCC
TTGGGCAATACCCCGCCGCGCTCGTTGAGCCTCTGGAGCACCTACGAACTGCCCGAGGGCGTGACCCTGGGC
TATGGCGCACGCTACGTCAGCCAGCGCAACGTCACCTCGGTGGACAACGGCAAGCTGGATGCCTACTGGGTG
CACAACATGATGCTCGGCTACCAGGCGACGCGCGACCTGAAACTGCAACTCAACCTCGACAACCTGTTCGAC
AAGGCCTACGTCGAGCGGGTGCGCCAGGTGTACGGCAACCAGTCGCGCTCCTCGGCCATCGAGTATGGCGAC
GGTCGCACGGCGATTCTTTCGGCGATCTACGCGTTCTGA

Translation:

MDRRNEPSPLPTKRPLAPLMLLMAACSSPALAEDAARKDDPLELGADTVTGEQASSRVERSASAKYAVPLLD
TPQTVTVVPQKVIQEQNALSLRQVLSNVSGITFNAGEGGGGSGDSINIRGFSANANMQVDGLRDSAQTSRSD
LFNLEAVEVIKGPNSVFGGAGTSGGSINMVSKQPKAEAFTHLGAGLGTDRYRRLTLDTNQPLEGLGESTAFR
LNLMAHHNDVAGREQIDKQRWGIAPSLTFGLDTPTRLTLSYFHQRDDNLPDYGVPALNGRKLDGVSRHDYFG
WRNLDEERIDNDVATLKLEHDFSDDFQLQNLIRYSHLHRDTVISASHVNQKGLPPGRYLPAGPQAYGRDSKT
RMWINQTNLTGRFDTFGLAHTLIGGFELSRETYDRTTYSYNLGKFYPANGFDLHNPPGYWNGPTDKRDSARN
RTELEVKALYAFDTIALDERWDLSLGLRYDWIDGTSRSTPSGKPTVRADSSDGKLSTRAGLVFKPLENGRVY
VSYGTSFNPSAEHLVTTGSGVTEATGGLAPEKNSTYELGTKWEFLGRRLELDAALFQVKKEDARERLADGSY
VLAGEQRVRGLELSASGKLNEHWDLFATYTYLDSETLKSSNTQREGQALGNTPPRSLSLWSTYELPEGVTLG
YGARYVSQRNVTSVDNGKLDAYWVHNMMLGYQATRDLKLQLNLDNLFDKAYVERVRQVYGNQSRSSAIEYGD
GRTAILSAIYAF*

AnnotationID:259 GeneID:249

AnnotatorUID: diggins

Modification Date/Time: 2005-02-23 06:06:42

Gene Name:

Confidence Code: 3

GeneProduct: putative TonB-dependent receptor

Cell Localization: ()

Synonyms: pfuA

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name: putative hydroxamate-type ferrisiderophore receptor

Functional Category Confidence Code: 5

COGs: COG4774,cd01347,pfam00593

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAM42044.1| (AE012390) TonB-dependent receptor [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 772

 Score =  494 bits (1271), Expect = e-138
 Identities = 308/780 (39%), Positives = 431/780 (55%), Gaps = 68/780 (8%)

>gb|AAN66486.1|AE016277_5 (AE016777) outer membrane ferric siderophore receptor [Pseudomonas
           putida KT2440]
          Length = 780

 Score =  451 bits (1160), Expect = e-126
 Identities = 285/786 (36%), Positives = 431/786 (54%), Gaps = 80/786 (10%)

Structural Features:

COG4774, Fiu, Outer membrane receptor for monomeric catechols 
[Inorganic ion transport and metabolism]
CD-Length = 750 residues,  99.3% aligned
Score =  954 bits (2468), Expect = 0.0
Identities = 360/757 (47%), Positives = 458/757 (60%), Gaps = 37/757 (4%)

cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channel
CD-Length = 672 residues, 100.0% aligned
Score =  349 bits (897), Expect = 5e-97

pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues, 100.0% aligned
Score =  304 bits (778), Expect = 3e-83
Identities = 201/728 (27%), Positives = 292/728 (40%), Gaps = 82/728 (11%)

Genomic Context:

Comment:

ReferenceID:501

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17643

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37466

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 249_cdd.html

URL:

Homologs By Global Alignment

Gene ID:249

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

423 PA1322_tr translation of PA1322 732 99.72 99.72 0 3807.0

23328 gb|AAG04711.1|AE004561_7 (AE004561) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1] 732 99.72 99.72 0 3807.0

23329 gb|AAC06225.1| (AF051693) hydroxamate-type ferrisiderophore receptor [Pseudomonas aeruginosa] 732 98.63 99.04 0 3770.0

GC ORFID: `43251`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1322`	Glimmer Score:
Start: `752442`	Stop: `754640`
Length: `2199`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1322 translation of PA1322`	Homolog Bit Score `1471.0`
Other Homologs: `t_PA1322 (ORF: GLIMMER)`
GC ORF Sequence
ATGGATCGTCGCAACGAGCCGTCCCCCTTGCCCACCAAACGCCCGCTGGCGCCGCTGATGCTGCTGATGGCC GCCTGCTCCTCGCCGGCCCTGGCCGAGGACGCGGCGCGCAAGGACGATCCCCTGGAACTGGGAGCCGACACG GTCACCGGCGAGCAGGCCTCGTCCAGGGTCGAACGCTCGGCCTCGGCCAAGTACGCCGTGCCGCTGCTGGAT ACCCCGCAGACCGTCACGGTGGTGCCGCAAAAGGTAATCCAGGAGCAGAACGCCCTGAGCCTGCGCCAGGTG CTGTCCAACGTCTCCGGCATCACCTTCAACGCCGGCGAAGGCGGCGGCGGTTCCGGCGACAGCATCAACATC CGCGGCTTCAGCGCCAACGCCAACATGCAGGTGGACGGGCTGCGCGACAGCGCCCAGACCAGCCGCAGCGAC CTGTTCAACCTGGAGGCGGTGGAAGTGATCAAGGGACCGAACTCGGTGTTCGGCGGCGCCGGCACCAGCGGC GGCAGCATCAACATGGTCAGCAAGCAGCCCAAGGCCGAAGCCTTCACCCACCTGGGCGCCGGGCTGGGCACG GACCGCTACCGGCGCCTGACCCTGGACACCAACCAGCCGCTGGAAGGGCTCGGCGAGTCGACCGCCTTCCGC CTCAACCTCATGGCCCACCACAACGATGTCGCCGGGCGCGAACAGATCGACAAGCAGCGCTGGGGCATCGCG CCATCCCTGACCTTCGGCCTGGACACCCCGACCCGCCTGACCCTGAGCTACTTCCACCAACGCGACGACAAC CTTCCCGACTATGGCGTGCCGGCGCTGAACGGGCGCAAGCTGGACGGCGTCAGCCGCCACGATTATTTCGGC TGGCGCAACCTGGACGAGGAGCGGATCGACAACGACGTCGCCACCCTCAAGCTCGAACACGATTTCAGCGAC GACTTCCAGTTGCAGAACCTCATCCGCTATTCCCACCTGCATCGGGACACGGTGATCTCCGCCTCCCACGTC AACCAGAAGGGCCTGCCGCCGGGGCGCTACCTGCCGGCGGGACCGCAAGCCTACGGGCGCGATTCGAAGACG CGGATGTGGATCAACCAGACCAACCTCACCGGCCGCTTCGACACCTTCGGCCTGGCGCATACGCTGATCGGC GGCTTCGAGCTGTCCCGCGAGACCTACGACCGCACCACCTACTCCTACAACCTGGGCAAGTTCTACCCGGCC AACGGCTTCGACCTGCACAACCCGCCGGGCTACTGGAACGGCCCCACCGACAAGCGCGACAGCGCGCGCAAC CGGACCGAACTGGAGGTCAAGGCGCTGTACGCCTTCGACACCATCGCCCTGGACGAGCGCTGGGACCTCAGC CTGGGCCTGCGCTACGACTGGATCGACGGCACCTCGCGGAGCACGCCCTCAGGCAAGCCGACGGTGCGCGCC GACAGTTCCGACGGCAAGCTGAGCACACGGGCGGGGCTGGTATTCAAGCCGCTGGAGAACGGGCGGGTGTAC GTCTCCTACGGCACCTCCTTCAACCCCTCGGCGGAACACCTGGTCACCACCGGCTCGGGCGTGACCGAGGCG ACCGGAGGCCTGGCGCCGGAGAAGAACAGCACCTACGAGCTGGGCACCAAGTGGGAGTTCCTCGGACGGCGC CTGGAGCTGGACGCGGCGCTGTTCCAGGTGAAGAAGGAAGACGCCCGCGAACGCCTGGCCGACGGCAGCTAC GTGCTTGCCGGCGAACAGCGCGTGCGTGGCCTGGAGCTGAGCGCCAGCGGCAAGCTGAACGAGCACTGGGAC CTCTTCGCCACCTACACCTACCTCGACAGCGAAACCCTGAAATCCAGTAACACGCAGCGTGAGGGACAGGCC TTGGGCAATACCCCGCCGCGCTCGTTGAGCCTCTGGAGCACCTACGAACTGCCCGAGGGCGTGACCCTGGGC TATGGCGCACGCTACGTCAGCCAGCGCAACGTCACCTCGGTGGACAACGGCAAGCTGGATGCCTACTGGGTG CACAACATGATGCTCGGCTACCAGGCGACGCGCGACCTGAAACTGCAACTCAACCTCGACAACCTGTTCGAC AAGGCCTACGTCGAGCGGGTGCGCCAGGTGTACGGCAACCAGTCGCGCTCCTCGGCCATCGAGTATGGCGAC GGTCGCACGGCGATTCTTTCGGCGATCTACGCGTTCTGA