ViewGene
Locus Name:
GeneID:
Location:

GeneID:2489
TrivialName: PA14_01640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01640
PAO1 Ortholog Locus:PA0133
Sequence Length:918
Protein Length:305
Start: 148823
Stop: 149740
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03523.1|AE004451_4 (AE004451) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 305/305 (100%), Positives = 305/305 (100%)
Sequence:
ATGGCCAAATCCCGCAACCCGTCGCTCGGCCAGGTCAGCGATTTCGATATCCGCCTGCTGCGCATCTTCAAG
ACCATCGTCGAGTGCGGCAGTTTCTCCGCCGCCGAGAGCACTCTCGGCCTCAGCCGCTCGGCGATCAGCCTG
CACATGGGCGACCTGGAGAAGCGCCTGGGCATGCGCCTGTGCCAGCGCGGCCGCGCCGGCTTCGCCCTGACC
GACGAGGGCCGCGAGGTCTATCGCGCGACCCAGACCCTGCTGGCGGCGCTGGAGGGGTTCCGCGCCGAGGTC
AACGACCTGCACCAGCACCTGCGCGGCGAACTCAACATCGGCATCATCAACAACCTGGTGACCCTGCCGCAG
ATGCGCATCACCCACGCCCTCAGCGCGCTCAAGGGGCAGGGACCGCAGGTGCGGATCAACATCGGCATGACC
ACCCCCAACGAGATCGAACTGGGCGTGCTCGACGGCCACCTGCATGTCGGCGTGGTGCCGTTGATCAGTCCG
CTGTCGGGGCTCGAGTACCTGCCGCTGTATGACGAGCACGCGCAGCTCTATTGCAGCCGCGGCCACGCACTG
TTCGAACGCGCCGACGGCGATATCGCGGTGGACGAGGTGCTCGCCGCGGACGCCGTGGCGCCCAGCTACCGC
CTGCCCGCCGAAGCCCAGGCGCGCCACCAGGAGCTGAACAACAGCGCCAGCGCCTCGGACCGCGAGGGCATG
GCGTTCCTGATCCTGACCGGCAACTTCATCGGCTACCTGCCGTCGCACTACGCCGCCGACTGGGTCGCCGCC
GGGATGCTGCGGCCCCTGCTGCCGGAGCGTTTCCACTACGCCATCGCGCTGACCATCGTGACCCGCAAGGGA
CGCCGGCCGAACCTGGTGCTGGAACGGTTCCTGGAGGCGGTGGCGGTGTCGTGA
Translation:
MAKSRNPSLGQVSDFDIRLLRIFKTIVECGSFSAAESTLGLSRSAISLHMGDLEKRLGMRLCQRGRAGFALT
DEGREVYRATQTLLAALEGFRAEVNDLHQHLRGELNIGIINNLVTLPQMRITHALSALKGQGPQVRINIGMT
TPNEIELGVLDGHLHVGVVPLISPLSGLEYLPLYDEHAQLYCSRGHALFERADGDIAVDEVLAADAVAPSYR
LPAEAQARHQELNNSASASDREGMAFLILTGNFIGYLPSHYAADWVAAGMLRPLLPERFHYAIALTIVTRKG
RRPNLVLERFLEAVAVS*
AnnotationID:2497GeneID:2489
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 05:05:15
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA0133
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66222.1|AE016250_4 (AE016776) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 305

 Score =  386 bits (991), Expect = e-106
 Identities = 196/303 (64%), Positives = 236/303 (77%), Gaps = 1/303 (0%)

>gb|AAO54315.1| (AE016858) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 306

 Score =  367 bits (941), Expect = e-101
 Identities = 196/306 (64%), Positives = 232/306 (75%), Gaps = 2/306 (0%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.0% aligned
Score =  115 bits (288), Expect = 7e-27
Identities = 69/292 (23%), Positives = 113/292 (38%), Gaps = 7/292 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4981




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22127




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33497




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2489_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2489
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4170
                           PA0133_tr
                           translation of PA0133
                           305
                           99.99
                           99.99
                           0
                           1546.0
     

     
     
123602
                           gb|AAG03523.1|AE004451_4
                           (AE004451) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           305
                           99.99
                           99.99
                           0
                           1546.0
     

     
     
123603
                           gb|AAQ59110.1|
                           (AE016915) probable transcriptional regulator [Chromobacterium violaceum ATCC 12472]
                           306
                           69.93
                           80.39
                           3
                           1092.0
     

     
     
123604
                           gb|AAN66222.1|AE016250_4
                           (AE016776) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           307
                           63.84
                           76.87
                           4
                           992.0
     

     
     
123605
                           gb|AAO54315.1|
                           (AE016858) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           307
                           63.84
                           75.57
                           3
                           945.0
     

     






      

          
GC ORFID: 45491How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0133Glimmer Score: 

          
Start: 5950162Stop: 5951079

          
Length: 918


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0133 translation of PA0133Homolog Bit Score 600.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3587 (ORF: BLASTX 362.0), t_PA0133 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAAATCCCGCAACCCGTCGCTCGGCCAGGTCAGCGATTTCGATATCCGCCTGCTGCGCATCTTCAAG 
ACCATCGTCGAGTGCGGCAGTTTCTCCGCCGCCGAGAGCACTCTCGGCCTCAGCCGCTCGGCGATCAGCCTG 
CACATGGGCGACCTGGAGAAGCGCCTGGGCATGCGCCTGTGCCAGCGCGGCCGCGCCGGCTTCGCCCTGACC 
GACGAGGGCCGCGAGGTCTATCGCGCGACCCAGACCCTGCTGGCGGCGCTGGAGGGGTTCCGCGCCGAGGTC 
AACGACCTGCACCAGCACCTGCGCGGCGAACTCAACATCGGCATCATCAACAACCTGGTGACCCTGCCGCAG 
ATGCGCATCACCCACGCCCTCAGCGCGCTCAAGGGGCAGGGACCGCAGGTGCGGATCAACATCGGCATGACC 
ACCCCCAACGAGATCGAACTGGGCGTGCTCGACGGCCACCTGCATGTCGGCGTGGTGCCGTTGATCAGTCCG 
CTGTCGGGGCTCGAGTACCTGCCGCTGTATGACGAGCACGCGCAGCTCTATTGCAGCCGCGGCCACGCACTG 
TTCGAACGCGCCGACGGCGATATCGCGGTGGACGAGGTGCTCGCCGCGGACGCCGTGGCGCCCAGCTACCGC 
CTGCCCGCCGAAGCCCAGGCGCGCCACCAGGAGCTGAACAACAGCGCCAGCGCCTCGGACCGCGAGGGCATG 
GCGTTCCTGATCCTGACCGGCAACTTCATCGGCTACCTGCCGTCGCACTACGCCGCCGACTGGGTCGCCGCC 
GGGATGCTGCGGCCCCTGCTGCCGGAGCGTTTCCACTACGCCATCGCGCTGACCATCGTGACCCGCAAGGGA 
CGCCGGCCGAACCTGGTGCTGGAACGGTTCCTGGAGGCGGTGGCGGTGTCGTGA