ViewGene
Locus Name:
GeneID:
Location:

GeneID:2488
TrivialName: PA14_62420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62420
PAO1 Ortholog Locus:PA4717
Sequence Length:894
Protein Length:297
Start: 5568023
Stop: 5568916
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08103.1|AE004885_8 (AE004885) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 297/297 (100%), Positives = 297/297 (100%)
Sequence:
ATGCTCTGGCGCAAAGGACGACGCAGTGACAACGTGATTGATGCCCGGGGCGAAGGAGGCGCAGGCGGCGGT
GGCGGCATGCGCATCGGCGGCAAGGGCCTCAGCCTGGGTGGGGTGGCCATCGTGGTGGTGGTCGGCCTGCTG
ATGGGCCAGGACCCGATGCAGATCCTCGGGTCGCTGCTCGGCCAGATGGACAGCCCGGCGCCGGCCACCCAG
CAGCAGGCCGGCGGTCGGGCCCCGGCGGCCAACGACGAGCAGAGCGAGTTCGTCCGCTCGATCCTCGGCGAC
ACCGAGGACACCTGGGAACAGATCTTCGCCAGCGGCCAGGCACAATACCAACAGCCCAAGCTGGTGCTGTTC
AGCAATGGGGTGAATTCCGCCTGCGGCTTCGCCTCGTCGGCCACCGGGCCGTTCTACTGTCCGGCCGACCGC
CGGGTCTACCTCGACCTGGAGTTCTTCCGCGAGATGGAACAGCGCTTCTCCGCCGCCGGCGACTTCGCCCAG
GCCTATGTGATCGCCCACGAGGTCGGCCACCACGTGCAGAACCTGATGGGCATCTCGGCCAAGATCAACGCA
GCCCGCCAGCGCGGCGCGCGCATGGAGGGCGCCAACGGCCTGTCGGTACGCCAGGAACTGCAGGCGGACTGC
TTCGCCGGGGTCTGGGCCAACCGTGCACAGCAGCGGCTGAACTGGCTGGAGCCGGGCGACATCGAGGAAGCC
CTGAACGCCGCCAACGCCATCGGCGACGATCGCCTGCAACGCCAGGGCCGCGGCATGGTGGTGCCGGATTCC
TTCACCCATGGCTCCTCGGCGCAACGCATGCGCTGGTTCAAGACCGGCTTCGAGAGCGGCTCGCCGGCCAGT
TGCGATACCTTCAAGGCCCAGACGCTCTGA
Translation:
MLWRKGRRSDNVIDARGEGGAGGGGGMRIGGKGLSLGGVAIVVVVGLLMGQDPMQILGSLLGQMDSPAPATQ
QQAGGRAPAANDEQSEFVRSILGDTEDTWEQIFASGQAQYQQPKLVLFSNGVNSACGFASSATGPFYCPADR
RVYLDLEFFREMEQRFSAAGDFAQAYVIAHEVGHHVQNLMGISAKINAARQRGARMEGANGLSVRQELQADC
FAGVWANRAQQRLNWLEPGDIEEALNAANAIGDDRLQRQGRGMVVPDSFTHGSSAQRMRWFKTGFESGSPAS
CDTFKAQTL*
AnnotationID:2496GeneID:2488
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 06:06:32
Gene Name:
Confidence Code:3
GeneProduct:putative zinc metallopeptidase
Cell Localization:()
Synonyms:PA4717
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04228
Secondary Functional Category(ies):inorganic ion transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58103.1| (AE016872) zinc metallopeptidase, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 296

 Score =  452 bits (1163), Expect = e-126
 Identities = 221/298 (74%), Positives = 249/298 (83%), Gaps = 3/298 (1%)

>gb|AAN70230.1|AE016662_6 (AE016791) metallopeptidase, zinc binding [Pseudomonas putida
           KT2440]
          Length = 316

 Score =  436 bits (1120), Expect = e-121
 Identities = 213/298 (71%), Positives = 245/298 (82%), Gaps = 5/298 (1%)

>emb|CAD16210.1| (AL646070) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia
           solanacearum]
          Length = 295

 Score =  315 bits (807), Expect = 2e-85
 Identities = 164/299 (54%), Positives = 199/299 (66%), Gaps = 13/299 (4%)








 
Structural Features:
pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase.
CD-Length = 294 residues, 100.0% aligned
Score =  387 bits (994), Expect = 1e-108
Identities = 181/297 (60%), Positives = 205/297 (69%), Gaps = 8/297 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4979




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22125




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37637




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2488_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2488
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4169
                           PA4717_tr
                           translation of PA4717
                           297
                           99.99
                           99.99
                           0
                           1546.0
     

     
     
123562
                           gb|AAG08103.1|AE004885_8
                           (AE004885) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           297
                           99.99
                           99.99
                           0
                           1546.0
     

     
     
123563
                           gb|AAO58103.1|
                           (AE016872) zinc metallopeptidase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           298
                           74.16
                           83.55
                           3
                           1167.0
     

     
     
123564
                           gb|AAN70230.1|AE016662_6
                           (AE016791) metallopeptidase, zinc binding [Pseudomonas putida KT2440]
                           325
                           66.15
                           75.69
                           37
                           1129.0
     

     
     
123570
                           emb|CAE37556.1|
                           (BX640429) putative membrane protein [Bordetella parapertussis]
                           298
                           54.69
                           65.10
                           16
                           786.0
     

     






      

          
GC ORFID: 45490How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4717Glimmer Score: 

          
Start: 4831703Stop: 4832596

          
Length: 894


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4717 translation of PA4717Homolog Bit Score 600.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5661 (ORF: BLASTX 448.0), t_PA4717 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCTGGCGCAAAGGACGACGCAGTGACAACGTGATTGATGCCCGGGGCGAAGGAGGCGCAGGCGGCGGT 
GGCGGCATGCGCATCGGCGGCAAGGGCCTCAGCCTGGGTGGGGTGGCCATCGTGGTGGTGGTCGGCCTGCTG 
ATGGGCCAGGACCCGATGCAGATCCTCGGGTCGCTGCTCGGCCAGATGGACAGCCCGGCGCCGGCCACCCAG 
CAGCAGGCCGGCGGTCGGGCCCCGGCGGCCAACGACGAGCAGAGCGAGTTCGTCCGCTCGATCCTCGGCGAC 
ACCGAGGACACCTGGGAACAGATCTTCGCCAGCGGCCAGGCACAATACCAACAGCCCAAGCTGGTGCTGTTC 
AGCAATGGGGTGAATTCCGCCTGCGGCTTCGCCTCGTCGGCCACCGGGCCGTTCTACTGTCCGGCCGACCGC 
CGGGTCTACCTCGACCTGGAGTTCTTCCGCGAGATGGAACAGCGCTTCTCCGCCGCCGGCGACTTCGCCCAG 
GCCTATGTGATCGCCCACGAGGTCGGCCACCACGTGCAGAACCTGATGGGCATCTCGGCCAAGATCAACGCA 
GCCCGCCAGCGCGGCGCGCGCATGGAGGGCGCCAACGGCCTGTCGGTACGCCAGGAACTGCAGGCGGACTGC 
TTCGCCGGGGTCTGGGCCAACCGTGCACAGCAGCGGCTGAACTGGCTGGAGCCGGGCGACATCGAGGAAGCC 
CTGAACGCCGCCAACGCCATCGGCGACGATCGCCTGCAACGCCAGGGCCGCGGCATGGTGGTGCCGGATTCC 
TTCACCCATGGCTCCTCGGCGCAACGCATGCGCTGGTTCAAGACCGGCTTCGAGAGCGGCTCGCCGGCCAGT 
TGCGATACCTTCAAGGCCCAGACGCTCTGA