ViewGene

Locus Name:
GeneID:
Location:

GeneID:2487
TrivialName: PA14_09730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09730
PAO1 Ortholog Locus:PA4188
Sequence Length:912
Protein Length:303
Start: 837600
Stop: 836689
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07575.1|AE004835_4 (AE004835) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 303/303 (100%), Positives = 303/303 (100%)
Sequence:
GTGAAATTCGAAGGTATCTATACCCCCGCCATCACCCCGCTGAGCGCCGACGGCAGCATCGACACCCAGGCC
TTCGCCGAGGTCCTGGAGTTTCTCGTCGAGTCGAAGGTGCACGGCATCGTGATCGGCGGCTCCACCGGCGAG
TACTACGCGCACACCGCCGAGGAACGCCTGGCCCTCGCCGCCCACGCCAGCGAAGTCATCGCCGGGCGCCTG
CCGCTGGTGGTGGGAACCGGCGCGATCCGCACCGAGGACTCGCTGGCCTACGCCGAAGCCGCCCGCGCCATC
GGCGCCGACGCCATCCTGGTCGGCTCGCCGCCCTACGCGCTGCCGACCTCGCGGGAGATCGCCGAGCACGTG
CTGGCGGTGGACCGCGCCGCCGGCCTGCCGATCATGCTCTACAACTATCCGGCGCGGATGGGCGTGGAGATG
GACGAGGCGTTCTTCGCCGCCGTCGCCGGCTGCCGCAACATCGTCGCGATCAAGGAAAGCTCCGGCTCCACC
GCGCAATTGCACCGCCTGGCCTGCCGCCACCCGCGGATCGCCTTGTCCTGCGGCTGGGACGACCAGGCCCTG
GAGTTCTTCGCCTGGGGCGCGCGCAGTTGGGTCTGCGCCGGCTCCAACTTCATCCCTGGCGAACACCTCGCC
CTGTACCAGGCCTGCGTGGTCGAGAACGACTTCGCCAAGGGCCGGCGCATCATGGCGGCGATGATGCCGCTG
ATGGACTTTCTCGAAAGCGGTCACTTCGTCCAGTCGATCAAGCACGGCTGCGAGCTGGCCGGCCTGCGCGCC
GGCGGCGTACGTGCGCCGCTGAAGGCGCTGGACGAGGCCGGCAAGGCGGCACTGGCGGAGATCGTCGCCAGG
CTCAAGGGCGAGGTCGCGCGGATCGTCGAGGGTGGCCGCCATGACTGA
Translation:
MKFEGIYTPAITPLSADGSIDTQAFAEVLEFLVESKVHGIVIGGSTGEYYAHTAEERLALAAHASEVIAGRL
PLVVGTGAIRTEDSLAYAEAARAIGADAILVGSPPYALPTSREIAEHVLAVDRAAGLPIMLYNYPARMGVEM
DEAFFAAVAGCRNIVAIKESSGSTAQLHRLACRHPRIALSCGWDDQALEFFAWGARSWVCAGSNFIPGEHLA
LYQACVVENDFAKGRRIMAAMMPLMDFLESGHFVQSIKHGCELAGLRAGGVRAPLKALDEAGKAALAEIVAR
LKGEVARIVEGGRHD*
AnnotationID:2495GeneID:2487
AnnotatorUID: diggins
Modification Date/Time: 2005-06-06 19:07:41
Gene Name:
Confidence Code:3
GeneProduct:putative dihydrodipicolinate synthase
Cell Localization:(1) Cytoplasmic
Synonyms:dapA
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00408,cd00950,cd00954,cd00951
Secondary Functional Category(ies):
EC Number:4.2.1.52
Status:ACTIVE
Pathway:
L-lysine biosynthesis via DAP pathway; 
tetrahydrodipicolinate from L-aspartate: step 3.
Homology:
>emb|CAD15818.1| (AL646068) PROBABLE DIHYDRODIPICOLINATE SYNTHASE (DHDPS) PROTEIN
           [Ralstonia solanacearum]
          Length = 302

 Score =  436 bits (1121), Expect = e-122
 Identities = 220/301 (73%), Positives = 246/301 (81%), Gaps = 1/301 (0%)

>gb|AAL44762.1| (AE009326) dihydrodipicolinate synthase [Agrobacterium tumefaciens
           str. C58 (U. Washington)]
          Length = 303

 Score =  428 bits (1101), Expect = e-119
 Identities = 214/302 (70%), Positives = 241/302 (79%)

>gb|AAO56552.1| (AE016867) dihydrodipicolinate synthase, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 303

 Score =  399 bits (1025), Expect = e-110
 Identities = 191/302 (63%), Positives = 237/302 (78%)
Structural Features:
cd00408, DHDPS-like, Dihydrodipicolinate synthase family.
CD-Length = 281 residues, 100.0% aligned
Score =  257 bits (657), Expect = 1e-69
 
cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS) is a key enzyme 
in lysine biosynthesis.
CD-Length = 284 residues, 100.0% aligned
Score =  213 bits (543), Expect = 3e-56

cd00954, NAL, N-Acetylneuraminic acid aldolase, 
also called N-acetylneuraminate lyase (NAL)
CD-Length = 288 residues,  99.3% aligned
Score =  142 bits (359), Expect = 6e-35

cd00951, KDGDH, 5-dehydro-4-deoxyglucarate dehydratase, also called 
5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of 
dihydrodipicolinate synthase (DHDPS)
CD-Length = 289 residues, 100.0% aligned
Score =  114 bits (288), Expect = 1e-26
Genomic Context:
Comment:
ReferenceID:14605
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22123
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36920
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2487_cdd.html
URL:
ReferenceID:38186
Author/Investigator(s): Richaud F, Richaud C, Ratet P, Patte JC.
Title: Chromosomal location and nucleotide sequence of the Escherichia coli dapA gene.
PubMed: 3514578
MedLine:
Source:
J Bacteriol. 1986 Apr;166(1):297-300.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3514578
Homologs By Global Alignment
Gene ID:2487

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4168 PA4188_tr translation of PA4188 303 99.99 99.99 0 1547.0
123557 gb|AAG07575.1|AE004835_4 (AE004835) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 303 99.66 99.99 0 1544.0
123558 emb|CAD15818.1| (AL646068) PROBABLE DIHYDRODIPICOLINATE SYNTHASE (DHDPS) PROTEIN [Ralstonia solanacearum] 304 72.03 80.92 3 1116.0
123559 gb|AAL44762.1| (AE009326) dihydrodipicolinate synthase [Agrobacterium tumefaciens str. C58 (U. Washington)] 303 70.29 79.53 0 1095.0
123560 gb|AAK89466.1| (AE008288) AGR_L_1788p [Agrobacterium tumefaciens str. C58 (Cereon)] 303 70.29 79.53 0 1095.0
GC ORFID: 45489How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4188Glimmer Score:
Start: 4116337Stop: 4117248
Length: 912
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4188 translation of PA4188Homolog Bit Score 600.0
Other Homologs: t_PA4188 (ORF: GLIMMER)
GC ORF Sequence
GTGAAATTCGAAGGTATCTATACCCCCGCCATCACCCCGCTGAGCGCCGACGGCAGCATCGACACCCAGGCC
TTCGCCGAGGTCCTGGAGTTTCTCGTCGAGTCGAAGGTGCACGGCATCGTGATCGGCGGCTCCACCGGCGAG
TACTACGCGCACACCGCCGAGGAACGCCTGGCCCTCGCCGCCCACGCCAGCGAAGTCATCGCCGGGCGCCTG
CCGCTGGTGGTGGGAACCGGCGCGATCCGCACCGAGGACTCGCTGGCCTACGCCGAAGCCGCCCGCGCCATC
GGCGCCGACGCCATCCTGGTCGGCTCGCCGCCCTACGCGCTGCCGACCTCGCGGGAGATCGCCGAGCACGTG
CTGGCGGTGGACCGCGCCGCCGGCCTGCCGATCATGCTCTACAACTATCCGGCGCGGATGGGCGTGGAGATG
GACGAGGCGTTCTTCGCCGCCGTCGCCGGCTGCCGCAACATCGTCGCGATCAAGGAAAGCTCCGGCTCCACC
GCGCAATTGCACCGCCTGGCCTGCCGCCACCCGCGGATCGCCTTGTCCTGCGGCTGGGACGACCAGGCCCTG
GAGTTCTTCGCCTGGGGCGCGCGCAGTTGGGTCTGCGCCGGCTCCAACTTCATCCCTGGCGAACACCTCGCC
CTGTACCAGGCCTGCGTGGTCGAGAACGACTTCGCCAAGGGCCGGCGCATCATGGCGGCGATGATGCCGCTG
ATGGACTTTCTCGAAAGCGGTCACTTCGTCCAGTCGATCAAGCACGGCTGCGAGCTGGCCGGCCTGCGCGCC
GGCGGCGTACGTGCGCCGCTGAAGGCGCTGGACGAGGCCGGCAAGGCGGCACTGGCGGAGATCGTCGCCAGG
CTCAAGGGCGAGGTCGCGCGGATCGTCGAGGGTGGCCGCCATGACTGA