ViewGene
Locus Name:
GeneID:
Location:

GeneID:2486
TrivialName: PA14_13470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13470
PAO1 Ortholog Locus:PA3898
Sequence Length:882
Protein Length:293
Start: 1159355
Stop: 1158474
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07285.1|AE004807_4 (AE004807) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 291/293 (99%), Positives = 291/293 (99%)
Sequence:
ATGCACCAACCCAGCGATTTCCAGGTATTCCGCACCCTCGACCGGACCTCCAATGCGCGCCTGCTGCGCAGC
AGCACGCTCAGCGACGGCCTGGCGCTCGCCCATTGGTACCGCGACGAAGCGGAGATCCTCGGCTACAGCGAC
CCCGGCCATCACACCCTGTCGCTCTACCTGCAGGGCGGCTGGCAGACCTTCCGCCGCGATCGTCCCGGGCTC
TATGGCGGCCCCGATCGCTTCTGCGTGATGCCGGCCGAACACCACTCCGACTGGGCGGTGACACGCGGCCTG
GGCTTCATGCACCTGTACATCAGCCCGGAACGCCTGGCCGGCGCGGCGGTACGCACCCTCGATTGCGAACCG
CGCAGCCTGCAACTGGAGGAGCGCACCTACATCCAGGACGAGCCGCTGGCCGCCCTGTGCCGGACCCTGGAA
CGACAGGACTGGAACGAACCCGGCGAGCGCCTGCTATGCACCAGCCTCGCCCACCAGGCGGTGGACCACCTG
CTGCTCACCGGGTGCGGCAGGCGTACCGACGTGCGCTGGCAGGGCGGGCTGGCCGCGCACGTGCGGCGGCGC
CTGGCCGACTACATCGAAAGCCACCTGGAGCAGCCGCTGGAACTGGGGTCGCTGGCGGAGCTGGCGGCGCTC
TCCGAGTACCACTTCGCGCGCATGTTCCGCGTCTCCTTCGGCCTGCCGCCGCACCGCTACGTGCTGGAACGA
CGCCTGGCGCGGGCCCGCGACCTGCTGGCGTACTCCGCGCAGTCGCTCCAGGAGGTCTCGCTGGCCTGCGGC
TTCGCCAGTCCGAGCCATTTCAACCGACGCTTCCGCGAAGCCCATGGCGCCACCCCGGGGCAGTACCGCGCC
GCCCTGAAAGCCTCCTGA
Translation:
MHQPSDFQVFRTLDRTSNARLLRSSTLSDGLALAHWYRDEAEILGYSDPGHHTLSLYLQGGWQTFRRDRPGL
YGGPDRFCVMPAEHHSDWAVTRGLGFMHLYISPERLAGAAVRTLDCEPRSLQLEERTYIQDEPLAALCRTLE
RQDWNEPGERLLCTSLAHQAVDHLLLTGCGRRTDVRWQGGLAAHVRRRLADYIESHLEQPLELGSLAELAAL
SEYHFARMFRVSFGLPPHRYVLERRLARARDLLAYSAQSLQEVSLACGFASPSHFNRRFREAHGATPGQYRA
ALKAS*
AnnotationID:2494GeneID:2486
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 20:08:04
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA3898
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE44053.1| (BX640422) AraC family regulatory protein [Bordetella pertussis]
          Length = 297

 Score =  296 bits (759), Expect = 7e-80
 Identities = 155/290 (53%), Positives = 192/290 (66%), Gaps = 2/290 (0%)

>gb|AAN70178.1|AE016657_3 (AE016791) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 291

 Score =  293 bits (750), Expect = 8e-79
 Identities = 153/286 (53%), Positives = 188/286 (65%), Gaps = 3/286 (1%)








 
Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins 
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 91.0 bits (226), Expect = 2e-19
Identities = 35/84 (41%), Positives = 52/84 (61%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4975




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22121




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38108




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2486_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2486
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4167
                           PA3898_tr
                           translation of PA3898
                           293
                           99.31
                           99.31
                           0
                           1546.0
     

     
     
123549
                           gb|AAG07285.1|AE004807_4
                           (AE004807) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           293
                           99.31
                           99.31
                           0
                           1546.0
     

     
     
123551
                           gb|AAN70178.1|AE016657_3
                           (AE016791) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           294
                           52.38
                           64.28
                           4
                           749.0
     

     
     
123550
                           emb|CAE44053.1|
                           (BX640422) AraC family regulatory protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           298
                           52.01
                           64.42
                           6
                           760.0
     

     
     
123552
                           gb|AAO54740.1|
                           (AE016860) transcriptional regulator, AraC family [Pseudomonas syringae pv. tomato str. DC3000]
                           295
                           51.18
                           62.37
                           6
                           731.0
     

     






      

          
GC ORFID: 45488How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3898Glimmer Score: 

          
Start: 3794583Stop: 3795464

          
Length: 882


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3898 translation of PA3898Homolog Bit Score 600.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5012 (ORF: BLASTX 297.0), t_PA3898 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACCAACCCAGCGATTTCCAGGTATTCCGCACCCTCGACCGGACCTCCAATGCGCGCCTGCTGCGCAGC 
AGCACGCTCAGCGACGGCCTGGCGCTCGCCCATTGGTACCGCGACGAAGCGGAGATCCTCGGCTACAGCGAC 
CCCGGCCATCACACCCTGTCGCTCTACCTGCAGGGCGGCTGGCAGACCTTCCGCCGCGATCGTCCCGGGCTC 
TATGGCGGCCCCGATCGCTTCTGCGTGATGCCGGCCGAACACCACTCCGACTGGGCGGTGACACGCGGCCTG 
GGCTTCATGCACCTGTACATCAGCCCGGAACGCCTGGCCGGCGCGGCGGTACGCACCCTCGATTGCGAACCG 
CGCAGCCTGCAACTGGAGGAGCGCACCTACATCCAGGACGAGCCGCTGGCCGCCCTGTGCCGGACCCTGGAA 
CGACAGGACTGGAACGAACCCGGCGAGCGCCTGCTATGCACCAGCCTCGCCCACCAGGCGGTGGACCACCTG 
CTGCTCACCGGGTGCGGCAGGCGTACCGACGTGCGCTGGCAGGGCGGGCTGGCCGCGCACGTGCGGCGGCGC 
CTGGCCGACTACATCGAAAGCCACCTGGAGCAGCCGCTGGAACTGGGGTCGCTGGCGGAGCTGGCGGCGCTC 
TCCGAGTACCACTTCGCGCGCATGTTCCGCGTCTCCTTCGGCCTGCCGCCGCACCGCTACGTGCTGGAACGA 
CGCCTGGCGCGGGCCCGCGACCTGCTGGCGTACTCCGCGCAGTCGCTCCAGGAGGTCTCGCTGGCCTGCGGC 
TTCGCCAGTCCGAGCCATTTCAACCGACGCTTCCGCGAAGCCCATGGCGCCACCCCGGGGCAGTACCGCGCC 
GCCCTGAAAGCCTCCTGA