ViewGene
Locus Name:
GeneID:
Location:

GeneID:2485
TrivialName: PA14_15210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15210
PAO1 Ortholog Locus:PA3778
Sequence Length:936
Protein Length:311
Start: 1289873
Stop: 1288938
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07165.1|AE004796_10 (AE004796) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 311/311 (100%), Positives = 311/311 (100%)
Sequence:
ATGATCCGCCTCAGCCAACGGGCCCTGGCCTACCTCAACGAGGTGATCCACCACGGCTCTCTTCGCCGCGCC
GCCCAGCACCTGAACATCGACCCCTCTGCCATCAGCCGGCAGCTCGCCAGCCTGGAGGAACATCTCGGCGTG
CGCCTCCTGCAACGCACCCCGCAAGGCGTGGCGCCTACCGAGGCCGGCGAGCTGCTGGTGGCGCACTACCGC
CAGCAACGGGCCAACGAAGAGGGCGTGCTGTCGCGTCTGTCGGCCCTGCAGGGGCTGCGCCAGGGCAAGGTG
CGCCTGGCGGTCGGCGAGGGCTTCATCGCCGACCTgATCTCCCAGCCATTGCAGAGCTTCATCCTGCGCTAC
CCCGGCATCGAGCTGGAGGTCCGCATGGCCGGGGCCAACGAAGGCGTGGCGCTGGTCAAGGAAGACGCCGTC
GACCTGGCCCTGGTCTACGCCCCGGTCGAGGACGGCGAACTGGACGTGCACGTCGACACCCGCCAGCCCCTC
GACCTGATCATCCCCGCCAACCATGCCCTCGCCGGACACCGCGGCGCGGTGCCGATGCGCGCGCTGCGCAAC
GAGTCGCTGGCGTTGATCCACAACAGCACCGGCATGGGCCAACTGGCGGTGATCGCCGCCCAACTGGAGCGC
ATCGAGCTAAGGCCGAAGCTGCGCACCAACTCGGTGGCGGTGCTGACCAATTTCGTCAAGTCCGGCATCGGC
GTGGCCTTCATGCCGGAGTTGACGGTCAGCCACGAGATCGAGGCCGGGCATATCCGTTGCCTGCCGCTGGCC
CACCCGGCGCTGCGCGACGCCCGCGCGCGGATCGTCAGCCACAAGGGCCGCGAGCTGACCGTGGCGGCGATC
GCCTGCCTGGAACACCTGCGCCGTGGCATGCGCTTCTTCAGTGGCGACGCGCCCGGGCTCTCGCAGCGCTGA
Translation:
MIRLSQRALAYLNEVIHHGSLRRAAQHLNIDPSAISRQLASLEEHLGVRLLQRTPQGVAPTEAGELLVAHYR
QQRANEEGVLSRLSALQGLRQGKVRLAVGEGFIADLISQPLQSFILRYPGIELEVRMAGANEGVALVKEDAV
DLALVYAPVEDGELDVHVDTRQPLDLIIPANHALAGHRGAVPMRALRNESLALIHNSTGMGQLAVIAAQLER
IELRPKLRTNSVAVLTNFVKSGIGVAFMPELTVSHEIEAGHIRCLPLAHPALRDARARIVSHKGRELTVAAI
ACLEHLRRGMRFFSGDAPGLSQR*
AnnotationID:2493GeneID:2485
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 17:05:16
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA3778
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31154.1| (BX640438) LysR-family transcriptional regulator [Bordetella
           bronchiseptica]
          Length = 306

 Score =  187 bits (474), Expect = 9e-47
 Identities = 105/302 (34%), Positives = 167/302 (55%)

>gb|AAO55397.1| (AE016862) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 283

 Score =  166 bits (419), Expect = 2e-40
 Identities = 100/268 (37%), Positives = 150/268 (55%), Gaps = 10/268 (3%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.3% aligned
Score =  114 bits (286), Expect = 3e-26
Identities = 95/295 (32%), Positives = 139/295 (47%), Gaps = 8/295 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score =  105 bits (262), Expect = 2e-23
Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 2/211 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4973




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22119




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31777




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2485_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2485
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4166
                           PA3778_tr
                           translation of PA3778
                           311
                           99.99
                           99.99
                           0
                           1548.0
     

     
     
123548
                           gb|AAG07165.1|AE004796_10
                           (AE004796) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           311
                           99.99
                           99.99
                           0
                           1548.0
     

     






      

          
GC ORFID: 45487How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3778Glimmer Score: 

          
Start: 3664064Stop: 3664999

          
Length: 936


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3778 translation of PA3778Homolog Bit Score 600.0

          
Other Homologs:  t_PA3778 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGCCTCAGCCAACGGGCCCTGGCCTACCTCAACGAGGTGATCCACCACGGCTCTCTTCGCCGCGCC 
GCCCAGCACCTGAACATCGACCCCTCTGCCATCAGCCGGCAGCTCGCCAGCCTGGAGGAACATCTCGGCGTG 
CGCCTCCTGCAACGCACCCCGCAAGGCGTGGCGCCTACCGAGGCCGGCGAGCTGCTGGTGGCGCACTACCGC 
CAGCAACGGGCCAACGAAGAGGGCGTGCTGTCGCGTCTGTCGGCCCTGCAGGGGCTGCGCCAGGGCAAGGTG 
CGCCTGGCGGTCGGCGAGGGCTTCATCGCCGACCTgATCTCCCAGCCATTGCAGAGCTTCATCCTGCGCTAC 
CCCGGCATCGAGCTGGAGGTCCGCATGGCCGGGGCCAACGAAGGCGTGGCGCTGGTCAAGGAAGACGCCGTC 
GACCTGGCCCTGGTCTACGCCCCGGTCGAGGACGGCGAACTGGACGTGCACGTCGACACCCGCCAGCCCCTC 
GACCTGATCATCCCCGCCAACCATGCCCTCGCCGGACACCGCGGCGCGGTGCCGATGCGCGCGCTGCGCAAC 
GAGTCGCTGGCGTTGATCCACAACAGCACCGGCATGGGCCAACTGGCGGTGATCGCCGCCCAACTGGAGCGC 
ATCGAGCTAAGGCCGAAGCTGCGCACCAACTCGGTGGCGGTGCTGACCAATTTCGTCAAGTCCGGCATCGGC 
GTGGCCTTCATGCCGGAGTTGACGGTCAGCCACGAGATCGAGGCCGGGCATATCCGTTGCCTGCCGCTGGCC 
CACCCGGCGCTGCGCGACGCCCGCGCGCGGATCGTCAGCCACAAGGGCCGCGAGCTGACCGTGGCGGCGATC 
GCCTGCCTGGAACACCTGCGCCGTGGCATGCGCTTCTTCAGTGGCGACGCGCCCGGGCTCTCGCAGCGCTGA